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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046222 through 18771 annotations produced 1 hits



(CG1109):

Annotation Number : CG1109
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046222
Gbrowse : chr3R:1486358-1491168 (+) // 100.0 //
Probeset : 1623656_s_at
Accessions : protein= NP_730982; /// NP_730983;, nucleotide= NM_169091; /// NM_169092;
FlyMine data for FBgn0046222.
BDGP gene expression has embryonic in situ data for BcDNA:LD24014: 17 pix of staining in 16 body parts.
Homophila reports that CG1109 is a close match (6e-16) to human gene GNB3 (NP_002066), a gene associated with {Hypertension, essential, susceptibility to}, 145500 (3).
VDRC has 2 RNAi stocks for FBgn0046222 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 ± 14 of 4 1.10None
Head36 ± 44 of 4 0.70Down
Eye41 ± 24 of 4 0.81None
Thoracicoabdominal ganglion55 ± 24 of 4 1.10None
Salivary gland65 ± 34 of 4 1.27Up
Crop62 ± 24 of 4 1.20Up
Midgut37 ± 34 of 4 0.70Down
Tubule51 ± 24 of 4 1.00None
Hindgut48 ± 14 of 4 0.90None
Heart49 ± 14 of 4 0.96None
Fat body81 ± 64 of 4 1.58Up
Ovary105 ± 34 of 4 2.00Up
Testis42 ± 34 of 4 0.80None
Male accessory glands99 ± 74 of 4 1.90Up
Virgin spermatheca83 ± 04 of 4 1.63Up
Mated spermatheca85 ± 74 of 4 1.66Up
Adult carcass39 ± 24 of 4 0.80Down
Larval CNS158 ± 284 of 4 3.08Up
Larval Salivary gland94 ± 34 of 4 1.83Up
Larval midgut61 ± 14 of 4 1.19None
Larval tubule78 ± 24 of 4 1.50Up
Larval hindgut72 ± 44 of 4 1.40Up
Larval fat body68 ± 74 of 4 1.30None
Larval trachea50 ± 34 of 4 0.98None
Larval carcass72 ± 34 of 4 1.41Up
S2 cells (growing)77 ± 34 of 4 1.50Up
Whole fly51 ± 34 of 4

Looking for FBgn0046222. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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