FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0046247 through 18771 annotations produced 1 hits

(CG5938):

Annotation Number : CG5938
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046247
Gbrowse : chr3R:23100428-23102868 (+) // 100.0 //
Probeset : 1633997_s_at
Accessions : protein= NP_001097947; /// NP_651553; /// NP_733210; /// NP_733211; /// NP_733212;, nucleotide= NM_001104477; /// NM_143296; /// NM_170331; /// NM_170332; /// NM_170333;
FlyMine data for FBgn0046247.
BioGrid reports that CG5938 interacts with CG7238 .
VDRC has 3 RNAi stocks for FBgn0046247 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	436 ± 8	4 of 4	2.00	Up
Head	241 ± 13	4 of 4	1.10	None
Eye	287 ± 12	4 of 4	1.30	Up
Thoracicoabdominal ganglion	401 ± 15	4 of 4	1.80	Up
Salivary gland	356 ± 24	4 of 4	1.61	Up
Crop	363 ± 4	4 of 4	1.60	Up
Midgut	269 ± 8	4 of 4	1.20	Up
Tubule	696 ± 26	4 of 4	3.10	Up
Hindgut	403 ± 5	4 of 4	1.80	Up
Heart	267 ± 5	4 of 4	1.21	Up
Fat body	214 ± 17	4 of 4	0.97	None
Ovary	338 ± 6	4 of 4	1.50	Up
Testis	318 ± 7	4 of 4	1.40	Up
Male accessory glands	105 ± 2	4 of 4	0.50	Down
Virgin spermatheca	183 ± 5	4 of 4	0.83	Down
Mated spermatheca	179 ± 4	4 of 4	0.81	Down
Adult carcass	247 ± 7	4 of 4	1.10	None
Larval CNS	174 ± 9	4 of 4	0.79	Down
Larval Salivary gland	103 ± 3	4 of 4	0.47	Down
Larval midgut	126 ± 6	4 of 4	0.57	Down
Larval tubule	252 ± 2	4 of 4	1.10	Up
Larval hindgut	139 ± 2	4 of 4	0.63	Down
Larval fat body	214 ± 10	4 of 4	1.00	None
Larval trachea	193 ± 23	4 of 4	0.87	None
Larval carcass	189 ± 20	4 of 4	0.85	None
S2 cells (growing)	106 ± 1	4 of 4	0.48	Down
Whole fly	221 ± 8	4 of 4

Looking for FBgn0046247. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720