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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046253 through 18771 annotations produced 1 hits



(CG3502):

Annotation Number : CG3502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046253
Gbrowse : chr2R:19230927-19235160 (-) // 100.0 //
Probeset : 1635921_at
Accessions : protein= NP_611781;, nucleotide= NM_137937;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0046253.
VDRC has 2 RNAi stocks for FBgn0046253 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.30None
Head0 ± 00 of 4 0.10Down
Eye4 ± 00 of 4 1.75None
Thoracicoabdominal ganglion0 ± 00 of 4 0.30None
Salivary gland7 ± 00 of 4 2.63Up
Crop3 ± 00 of 4 1.20None
Midgut2 ± 10 of 4 1.00None
Tubule1 ± 00 of 4 0.50Down
Hindgut1 ± 00 of 4 0.60None
Heart1 ± 00 of 4 0.67None
Fat body1 ± 10 of 4 0.34None
Ovary0 ± 00 of 4 0.30None
Testis2 ± 00 of 4 0.90None
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca2 ± 00 of 4 0.99None
Mated spermatheca1 ± 00 of 4 0.42None
Adult carcass2 ± 20 of 4 1.00None
Larval CNS1 ± 10 of 4 0.63None
Larval Salivary gland8 ± 00 of 4 2.90Up
Larval midgut5 ± 11 of 4 1.86None
Larval tubule2 ± 00 of 4 0.80None
Larval hindgut5 ± 22 of 4 2.08None
Larval fat body1 ± 00 of 4 0.60None
Larval trachea152 ± 234 of 453.39Up
Larval carcass222 ± 894 of 477.96None
S2 cells (growing)0 ± 00 of 4 0.18Down
Whole fly2 ± 00 of 4

Looking for FBgn0046253. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime