FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0046296 through 18771 annotations produced 1 hits

(CG11534):

Annotation Number : CG11534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046296
Gbrowse : chr3L:12125271-12126936 (+) // 100.0 //
Probeset : 1626175_at
Accessions : protein= NP_648549;, nucleotide= NM_140292;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physic
FlyMine data for FBgn0046296.
BDGP gene expression has embryonic in situ data for BEST:GH12489: 2 pix of staining in 1 body parts.
Homophila reports that CG11534 is a close match (6e-42) to human gene AP162;KIAA0356;OPTB6;PLEKHM1 (NP_055613), a gene associated with Osteopetrosis, autosomal recessive 6, 611497 (3).
BioGrid reports that CG11534 interacts with CG17328 CG8134 CG5053 .
TRiP has 2 RNAi stocks for FBgn0046296 available for purchase.
VDRC has 2 RNAi stocks for FBgn0046296 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	91 ± 3	4 of 4	1.10	None
Head	101 ± 3	4 of 4	1.30	Up
Eye	107 ± 5	4 of 4	1.33	Up
Thoracicoabdominal ganglion	72 ± 3	4 of 4	0.90	None
Salivary gland	161 ± 4	4 of 4	2.00	Up
Crop	108 ± 1	4 of 4	1.40	Up
Midgut	105 ± 7	4 of 4	1.30	Up
Tubule	143 ± 4	4 of 4	1.80	Up
Hindgut	101 ± 4	4 of 4	1.30	Up
Heart	113 ± 4	4 of 4	1.41	Up
Fat body	145 ± 20	4 of 4	1.81	Up
Ovary	146 ± 3	4 of 4	1.80	Up
Testis	27 ± 1	4 of 4	0.30	Down
Male accessory glands	78 ± 1	4 of 4	1.00	None
Virgin spermatheca	284 ± 12	4 of 4	3.54	Up
Mated spermatheca	229 ± 15	4 of 4	2.85	Up
Adult carcass	97 ± 3	4 of 4	1.20	Up
Larval CNS	58 ± 2	4 of 4	0.72	Down
Larval Salivary gland	111 ± 1	4 of 4	1.38	Up
Larval midgut	148 ± 12	4 of 4	1.84	Up
Larval tubule	216 ± 4	4 of 4	2.70	Up
Larval hindgut	104 ± 7	4 of 4	1.30	Up
Larval fat body	146 ± 19	4 of 4	1.80	Up
Larval trachea	112 ± 10	4 of 4	1.40	Up
Larval carcass	116 ± 11	4 of 4	1.44	Up
S2 cells (growing)	57 ± 1	4 of 4	0.71	Down
Whole fly	80 ± 5	4 of 4

Looking for FBgn0046296. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720