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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0046301 through 18771 annotations produced 1 hits


Annotation Number : CG7148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046301
Gbrowse : chr3L:21823643-21825305 (-) // 100.0 //
Probeset : 1623686_at
Accessions : protein= NP_649366;, nucleotide= NM_141109;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0046301.
BDGP gene expression has embryonic in situ data for BEST:GH10766: 4 pix of staining in 1 body parts.
BioGrid reports that CG7148 interacts with CG8881 .
TRiP has 1 RNAi stocks for FBgn0046301 available for purchase.
VDRC has 2 RNAi stocks for FBgn0046301 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain139 44 of 4 1.50Up
Head90 64 of 4 1.00None
Eye80 24 of 4 0.87Down
Thoracicoabdominal ganglion126 34 of 4 1.40Up
Salivary gland186 104 of 4 2.02Up
Crop93 44 of 4 1.00None
Midgut62 54 of 4 0.70Down
Tubule91 34 of 4 1.00None
Hindgut111 04 of 4 1.20Up
Heart74 34 of 4 0.81Down
Fat body50 14 of 4 0.55Down
Ovary93 14 of 4 1.00None
Testis107 74 of 4 1.20None
Male accessory glands73 64 of 4 0.80None
Virgin spermatheca50 54 of 4 0.55Down
Mated spermatheca48 14 of 4 0.52Down
Adult carcass101 64 of 4 1.10None
Larval CNS116 84 of 4 1.26Up
Larval Salivary gland115 34 of 4 1.25Up
Larval midgut63 34 of 4 0.68Down
Larval tubule59 04 of 4 0.60Down
Larval hindgut83 54 of 4 0.90None
Larval fat body62 44 of 4 0.70Down
Larval trachea81 64 of 4 0.88None
Larval carcass109 24 of 4 1.18Up
S2 cells (growing)97 34 of 4 1.05None
Whole fly92 34 of 4

Looking for FBgn0046301. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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