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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046689 through 18771 annotations produced 1 hits



Tak1-like 1 (Takl1):

Annotation Number : CG31421
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046689
Gbrowse : chr3R:16596657-16598290 (-) // 100.0 //
Probeset : 1628541_at
Accessions : protein= NP_732554;, nucleotide= NM_169924;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred
FlyMine data for FBgn0046689.
Homophila reports that CG31421 is a close match (3e-11) to human gene GRK1;RHOK;RK (NP_002920), a gene associated with Oguchi disease-2, 258100 (3).
TRiP has 1 RNAi stocks for FBgn0046689 available for purchase.
VDRC has 2 RNAi stocks for FBgn0046689 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 12 of 4 0.10Down
Head8 ± 10 of 4 0.20Down
Eye5 ± 10 of 4 0.16Down
Thoracicoabdominal ganglion4 ± 21 of 4 0.10Down
Salivary gland12 ± 20 of 4 0.39Down
Crop5 ± 10 of 4 0.20Down
Midgut236 ± 224 of 4 7.30Up
Tubule79 ± 24 of 4 2.40Up
Hindgut145 ± 54 of 4 4.50Up
Heart5 ± 01 of 4 0.18Down
Fat body10 ± 21 of 4 0.32Down
Ovary6 ± 11 of 4 0.20Down
Testis5 ± 10 of 4 0.20Down
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca9 ± 11 of 4 0.28Down
Mated spermatheca4 ± 10 of 4 0.13Down
Adult carcass6 ± 20 of 4 0.20Down
Larval CNS5 ± 00 of 4 0.18Down
Larval Salivary gland9 ± 00 of 4 0.28Down
Larval midgut148 ± 254 of 4 4.56Up
Larval tubule98 ± 54 of 4 3.00Up
Larval hindgut136 ± 144 of 4 4.21Up
Larval fat body4 ± 20 of 4 0.10Down
Larval trachea6 ± 12 of 4 0.21Down
Larval carcass9 ± 10 of 4 0.28Down
S2 cells (growing)6 ± 00 of 4 0.20Down
Whole fly32 ± 54 of 4

Looking for FBgn0046689. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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