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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046697 through 18771 annotations produced 1 hits



Ppr-Y (Ppr-Y):

Annotation Number : CG40440
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046697
Gbrowse : chrYHet:156741-206246 (+) // 100.0 //
Probeset : 1631155_at
Accessions : protein= NP_001015502;, nucleotide= NM_001015502;
Interpro : 0005515 // protein binding // inferred from electronic annotation /// 0008599 // protein phosphatase type 1 regulator ac
FlyMine data for FBgn0046697.
TRiP has 1 RNAi stocks for FBgn0046697 available for purchase.
VDRC has 1 RNAi stocks for FBgn0046697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head1 ± 00 of 4 0.40None
Eye0 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.20Down
Salivary gland5 ± 10 of 4 1.14None
Crop0 ± 00 of 4 0.20Down
Midgut3 ± 10 of 4 0.80None
Tubule2 ± 00 of 4 0.60Down
Hindgut0 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.55None
Fat body1 ± 00 of 4 0.24None
Ovary1 ± 00 of 4 0.20None
Testis40 ± 24 of 4 9.10Up
Male accessory glands1 ± 10 of 4 0.40None
Virgin spermatheca1 ± 00 of 4 0.27None
Mated spermatheca1 ± 00 of 4 0.23None
Adult carcass4 ± 10 of 4 1.10None
Larval CNS0 ± 00 of 4 0.17Down
Larval Salivary gland2 ± 00 of 4 0.61None
Larval midgut3 ± 10 of 4 0.89None
Larval tubule2 ± 00 of 4 0.70None
Larval hindgut1 ± 00 of 4 0.40None
Larval fat body4 ± 21 of 4 1.00None
Larval trachea4 ± 21 of 4 1.05None
Larval carcass0 ± 00 of 4 0.19Down
S2 cells (growing)0 ± 00 of 4 0.11Down
Whole fly4 ± 13 of 4

Looking for FBgn0046697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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