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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046698 through 18771 annotations produced 1 hits



Pp1-Y2 (Pp1-Y2):

Annotation Number : CG40448
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046698
Gbrowse : chrYHet:279994-291785 (+) // 100.0 //
Probeset : 1637909_at
Accessions : protein= NP_001015497;, nucleotide= NM_001015497;
Interpro : 0004721 // phosphoprotein phosphatase activity // inferred from electronic annotation /// 0004722 // protein serine/thre
FlyMine data for FBgn0046698.
VDRC has 1 RNAi stocks for FBgn0046698 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head6 ± 00 of 4 0.30Down
Eye5 ± 00 of 4 0.22Down
Thoracicoabdominal ganglion4 ± 20 of 4 0.20Down
Salivary gland5 ± 10 of 4 0.26Down
Crop4 ± 10 of 4 0.20Down
Midgut10 ± 40 of 4 0.50None
Tubule4 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart2 ± 10 of 4 0.10Down
Fat body3 ± 20 of 4 0.17Down
Ovary3 ± 00 of 4 0.10Down
Testis165 ± 44 of 4 7.30Up
Male accessory glands2 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass10 ± 40 of 4 0.50None
Larval CNS3 ± 20 of 4 0.14Down
Larval Salivary gland1 ± 00 of 4 0.06Down
Larval midgut9 ± 30 of 4 0.41Down
Larval tubule4 ± 10 of 4 0.20Down
Larval hindgut3 ± 10 of 4 0.17Down
Larval fat body25 ± 71 of 4 1.10None
Larval trachea4 ± 21 of 4 0.20Down
Larval carcass5 ± 10 of 4 0.24Down
S2 cells (growing)3 ± 10 of 4 0.17Down
Whole fly22 ± 13 of 4

Looking for FBgn0046698. 1 entries matched from 18771, in 3 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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