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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046756 through 18771 annotations produced 1 hits



():

Annotation Number : SD10988
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046756
Gbrowse : chr3R:27593694-27595146 (+) // 100.0 //
Probeset : 1641208_s_at
Accessions : protein= , nucleotide= NR_002507;
FlyMine data for FBgn0046756.
TRiP has 1 RNAi stocks for FBgn0046756 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 04 of 4 3.60Up
Head6 ± 00 of 4 1.80None
Eye5 ± 10 of 4 1.53None
Thoracicoabdominal ganglion20 ± 33 of 4 6.00Up
Salivary gland8 ± 30 of 4 2.33None
Crop8 ± 21 of 4 2.40None
Midgut6 ± 10 of 4 1.80None
Tubule7 ± 20 of 4 2.00None
Hindgut6 ± 10 of 4 1.80None
Heart6 ± 11 of 4 1.78None
Fat body13 ± 92 of 4 3.97None
Ovary2 ± 00 of 4 0.80None
Testis1 ± 00 of 4 0.40None
Male accessory glands8 ± 20 of 4 2.60None
Virgin spermatheca12 ± 13 of 4 3.55Up
Mated spermatheca13 ± 22 of 4 3.77Up
Adult carcass3 ± 10 of 4 1.10None
Larval CNS9 ± 31 of 4 2.68Up
Larval Salivary gland8 ± 10 of 4 2.39Up
Larval midgut4 ± 10 of 4 1.18None
Larval tubule4 ± 10 of 4 1.20None
Larval hindgut6 ± 20 of 4 1.86None
Larval fat body7 ± 30 of 4 2.10None
Larval trachea6 ± 22 of 4 1.91None
Larval carcass5 ± 10 of 4 1.52None
S2 cells (growing)2 ± 10 of 4 0.85None
Whole fly3 ± 10 of 4

Looking for FBgn0046756. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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