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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046793 through 18771 annotations produced 1 hits



(CG32236):

Annotation Number : CG32236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046793
Gbrowse : chr3L:4665926-4667389 (-) // 100.0 //
Probeset : 1636975_at
Accessions : protein= NP_729026;, nucleotide= NM_168101;
Interpro : 0003755 // peptidyl-prolyl cis-trans isomerase activity // inferred from electronic annotation /// 0016853 // isomerase
FlyMine data for FBgn0046793.
BDGP gene expression has embryonic in situ data for BcDNA:GH16763: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0046793 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head3 10 of 4 0.00Down
Eye2 10 of 4 0.04Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 00 of 4 0.04Down
Crop4 00 of 4 0.10Down
Midgut7 20 of 4 0.10Down
Tubule1 00 of 4 0.00Down
Hindgut2 00 of 4 0.00Down
Heart3 10 of 4 0.04Down
Fat body3 10 of 4 0.05Down
Ovary0 00 of 4 0.00Down
Testis959 74 of 412.80Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca2 00 of 4 0.03Down
Mated spermatheca4 10 of 4 0.06Down
Adult carcass7 21 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland3 00 of 4 0.05Down
Larval midgut8 31 of 4 0.11Down
Larval tubule2 00 of 4 0.00Down
Larval hindgut2 00 of 4 0.03Down
Larval fat body96 523 of 4 1.30None
Larval trachea3 20 of 4 0.04Down
Larval carcass4 10 of 4 0.06Down
S2 cells (growing)1 00 of 4 0.02Down
Whole fly74 14 of 4

Looking for FBgn0046793. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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