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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046873 through 18771 annotations produced 1 hits



kitty /// PFTAIRE-interacting factor 2 (CG9314 /// Pif2):

Annotation Number : CG31483
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046873
Gbrowse : chr3R:2374757-2375642 (+) // 100.0 //
Probeset : 1634976_at
Accessions : protein= NP_731093;, nucleotide= NM_169147;
Interpro : 0004096 // catalase activity // inferred from electronic annotation /// 0005506 // iron ion binding // inferred from ele
FlyMine data for FBgn0046873.
VDRC has 2 RNAi stocks for FBgn0046873 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.00Down
Thoracicoabdominal ganglion1 10 of 4 0.00Down
Salivary gland4 10 of 4 0.05Down
Crop3 10 of 4 0.00Down
Midgut1 00 of 4 0.00Down
Tubule2 00 of 4 0.00Down
Hindgut3 10 of 4 0.00Down
Heart0 00 of 4 0.01Down
Fat body2 00 of 4 0.02Down
Ovary0 00 of 4 0.00Down
Testis1137 94 of 411.60Up
Male accessory glands5 20 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.02Down
Mated spermatheca3 20 of 4 0.04Down
Adult carcass8 20 of 4 0.10Down
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland2 10 of 4 0.02Down
Larval midgut2 00 of 4 0.02Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut1 00 of 4 0.01Down
Larval fat body57 302 of 4 0.60None
Larval trachea7 90 of 4 0.08Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)1 10 of 4 0.02Down
Whole fly97 14 of 4

Looking for FBgn0046873. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime