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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046874 through 18771 annotations produced 1 hits



PFTAIRE-interacting factor 1A /// PFTAIRE-interacting factor 1B (Pif1A /// Pif1B):

Annotation Number : CG32940
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046874 /// FBgn0261015
Gbrowse : chr3R:4600007-4616263 (-) // 100.0 //
Probeset : 1625843_s_at
Accessions : protein= NP_001027155; /// NP_001027156; /// NP_001027157; /// NP_001027158; /// NP_001163556; /// NP_649834;, nucleotide= NM_001031984; /// NM_001031985; /// NM_001031986; /// NM_001031986; /// NM_001031987; /// NM_001031987; /// NM_001170085; /// NM_141577; /// NM_141577;
Pathway : DNA-dependent // inferred from electronic annotation"
FlyMine data for FBgn0046874 /// FBgn0261015.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain901 274 of 4 1.60Up
Head1195 754 of 4 2.10Up
Eye1159 314 of 4 2.05Up
Thoracicoabdominal ganglion1589 324 of 4 2.80Up
Salivary gland71 84 of 4 0.13Down
Crop1395 474 of 4 2.50Up
Midgut245 114 of 4 0.40Down
Tubule140 144 of 4 0.20Down
Hindgut761 144 of 4 1.30Up
Heart1142 814 of 4 2.02Up
Fat body889 1024 of 4 1.57Up
Ovary31 24 of 4 0.10Down
Testis928 204 of 4 1.60Up
Male accessory glands404 144 of 4 0.70Down
Virgin spermatheca1038 574 of 4 1.83Up
Mated spermatheca910 834 of 4 1.61Up
Adult carcass1844 224 of 4 3.30Up
Larval CNS299 304 of 4 0.53Down
Larval Salivary gland19 04 of 4 0.03Down
Larval midgut143 64 of 4 0.25Down
Larval tubule285 334 of 4 0.50Down
Larval hindgut708 194 of 4 1.25Up
Larval fat body455 194 of 4 0.80Down
Larval trachea192 544 of 4 0.34Down
Larval carcass2136 524 of 4 3.77Up
S2 cells (growing)444 54 of 4 0.79Down
Whole fly566 264 of 4

Looking for FBgn0046874. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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