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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0046876 through 18771 annotations produced 1 hits



Pseudogene 83e (Obp83ef):

Annotation Number : CG31557
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0046876
Gbrowse : chr3R:1935500-1936730 (-) // 100.0 //
Probeset : 1623289_at
Accessions : protein= NP_731042;, nucleotide= NM_169125;
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0046876.
VDRC has 1 RNAi stocks for FBgn0046876 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 00 of 4 0.90None
Head36 ± 54 of 4 3.80Up
Eye24 ± 63 of 4 2.63None
Thoracicoabdominal ganglion3 ± 00 of 4 0.40Down
Salivary gland5 ± 20 of 4 0.54None
Crop6 ± 00 of 4 0.70Down
Midgut4 ± 20 of 4 0.50None
Tubule5 ± 00 of 4 0.60Down
Hindgut5 ± 00 of 4 0.60Down
Heart73 ± 14 of 4 7.87Up
Fat body77 ± 204 of 4 8.25Up
Ovary0 ± 00 of 4 0.10Down
Testis4 ± 10 of 4 0.40Down
Male accessory glands9 ± 10 of 4 1.00None
Virgin spermatheca33 ± 44 of 4 3.59Up
Mated spermatheca38 ± 24 of 4 4.14Up
Adult carcass65 ± 84 of 4 6.90Up
Larval CNS1 ± 10 of 4 0.20Down
Larval Salivary gland6 ± 11 of 4 0.71None
Larval midgut2 ± 00 of 4 0.30Down
Larval tubule7 ± 10 of 4 0.80None
Larval hindgut6 ± 00 of 4 0.71None
Larval fat body725 ± 744 of 477.40Up
Larval trachea3 ± 30 of 4 0.34Down
Larval carcass2 ± 00 of 4 0.31Down
S2 cells (growing)2 ± 00 of 4 0.22Down
Whole fly9 ± 11 of 4

Looking for FBgn0046876. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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