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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0047038 through 18771 annotations produced 1 hits



/// NADH ubiquinone oxidoreductase 13 kDa B (CG33493 /// CG6463):

Annotation Number : CG6463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0047038
Gbrowse : chr3L:10686276-10687206 (-) // 100.0 //
Probeset : 1640872_at
Accessions : protein= NP_648409;, nucleotide= NM_140152;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0022904 // respiratory electron transport cha
Interpro : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005747 // mitochondrial respiratory
FlyMine data for FBgn0047038.
VDRC has 3 RNAi stocks for FBgn0047038 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain567 ± 154 of 4 1.10None
Head576 ± 114 of 4 1.10None
Eye582 ± 224 of 4 1.16None
Thoracicoabdominal ganglion727 ± 264 of 4 1.40Up
Salivary gland448 ± 194 of 4 0.89None
Crop442 ± 294 of 4 0.90None
Midgut472 ± 124 of 4 0.90None
Tubule555 ± 74 of 4 1.10Up
Hindgut753 ± 134 of 4 1.50Up
Heart558 ± 184 of 4 1.11None
Fat body694 ± 544 of 4 1.38Up
Ovary238 ± 44 of 4 0.50Down
Testis305 ± 104 of 4 0.60Down
Male accessory glands381 ± 194 of 4 0.80None
Virgin spermatheca374 ± 154 of 4 0.74Down
Mated spermatheca335 ± 104 of 4 0.67Down
Adult carcass1034 ± 224 of 4 2.10Up
Larval CNS372 ± 294 of 4 0.74Down
Larval Salivary gland396 ± 214 of 4 0.79None
Larval midgut434 ± 324 of 4 0.86None
Larval tubule388 ± 284 of 4 0.80None
Larval hindgut568 ± 234 of 4 1.13None
Larval fat body173 ± 104 of 4 0.30Down
Larval trachea268 ± 384 of 4 0.53Down
Larval carcass464 ± 394 of 4 0.92None
S2 cells (growing)333 ± 54 of 4 0.66Down
Whole fly503 ± 414 of 4

Looking for FBgn0047038. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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