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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0047095 through 18771 annotations produced 1 hits



():

Annotation Number : RE54004
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0047095
Gbrowse : chrX:19065109-19068929 (-) // 100.0 //
Probeset : 1635975_s_at
Accessions : protein= , nucleotide= NR_002468;
FlyMine data for FBgn0047095.
TRiP has 1 RNAi stocks for FBgn0047095 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 23 of 4 0.30Down
Head63 64 of 4 1.70Up
Eye16 24 of 4 0.44Down
Thoracicoabdominal ganglion6 10 of 4 0.20Down
Salivary gland21 02 of 4 0.57Down
Crop12 12 of 4 0.30Down
Midgut11 11 of 4 0.30Down
Tubule9 11 of 4 0.20Down
Hindgut377 124 of 4 9.90Up
Heart8 01 of 4 0.23Down
Fat body17 84 of 4 0.44Down
Ovary15 24 of 4 0.40Down
Testis18 14 of 4 0.50Down
Male accessory glands6 30 of 4 0.20Down
Virgin spermatheca6 23 of 4 0.18Down
Mated spermatheca9 03 of 4 0.25Down
Adult carcass96 44 of 4 2.50Up
Larval CNS20 34 of 4 0.55Down
Larval Salivary gland19 03 of 4 0.50Down
Larval midgut22 23 of 4 0.59Down
Larval tubule11 32 of 4 0.30Down
Larval hindgut103 14 of 4 2.71Up
Larval fat body13 21 of 4 0.40Down
Larval trachea105 264 of 4 2.77Up
Larval carcass158 174 of 4 4.16Up
S2 cells (growing)59 34 of 4 1.57Up
Whole fly38 24 of 4

Looking for FBgn0047095. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime