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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0047114 through 18771 annotations produced 1 hits



/// /// /// (CG31142 /// DgriCG31142 /// DmojCG31142 /// DvirCG31142):

Annotation Number : CG31142
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0047114
Gbrowse : chr3R:19754971-19755712 (+) // 100.0 //
Probeset : 1625733_at
Accessions : protein= NP_732915;, nucleotide= NM_170097;
FlyMine data for FBgn0047114.
BDGP gene expression has embryonic in situ data for BcDNA:RE39515: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0047114 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain44 ± 24 of 4 0.90None
Head44 ± 34 of 4 0.90None
Eye42 ± 14 of 4 0.84None
Thoracicoabdominal ganglion69 ± 54 of 4 1.40Up
Salivary gland193 ± 94 of 4 3.87Up
Crop72 ± 74 of 4 1.50Up
Midgut81 ± 44 of 4 1.60Up
Tubule113 ± 54 of 4 2.30Up
Hindgut56 ± 14 of 4 1.10None
Heart64 ± 24 of 4 1.29Up
Fat body76 ± 114 of 4 1.53Up
Ovary71 ± 14 of 4 1.40Up
Testis70 ± 74 of 4 1.40None
Male accessory glands89 ± 114 of 4 1.80Up
Virgin spermatheca63 ± 64 of 4 1.27None
Mated spermatheca60 ± 64 of 4 1.21None
Adult carcass55 ± 24 of 4 1.10None
Larval CNS119 ± 14 of 4 2.38Up
Larval Salivary gland115 ± 54 of 4 2.31Up
Larval midgut67 ± 44 of 4 1.35Up
Larval tubule123 ± 54 of 4 2.50Up
Larval hindgut68 ± 34 of 4 1.36Up
Larval fat body66 ± 44 of 4 1.30Up
Larval trachea83 ± 54 of 4 1.68Up
Larval carcass65 ± 44 of 4 1.31Up
S2 cells (growing)103 ± 44 of 4 2.07Up
Whole fly50 ± 34 of 4

Looking for FBgn0047114. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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