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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050001 through 18771 annotations produced 2 hits



(CG30001):

Annotation Number : Stencil:2R:4882320:4881892:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050001
Gbrowse : chr2R:5708764-5709192 (-) // 100.0 //
Probeset : 1639289_at
Accessions : protein= NP_001137628; /// NP_724825;, nucleotide= NM_001144156; /// NM_165697;
FlyMine data for FBgn0050001.
VDRC has 4 RNAi stocks for FBgn0050001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 02 of 4 0.20Down
Head7 ± 11 of 4 0.20Down
Eye12 ± 23 of 4 0.38Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.20Down
Salivary gland6 ± 20 of 4 0.18Down
Crop13 ± 12 of 4 0.40Down
Midgut7 ± 10 of 4 0.20Down
Tubule5 ± 00 of 4 0.20Down
Hindgut8 ± 10 of 4 0.20Down
Heart8 ± 23 of 4 0.26Down
Fat body5 ± 41 of 4 0.17Down
Ovary67 ± 14 of 4 2.00Up
Testis17 ± 14 of 4 0.50Down
Male accessory glands10 ± 20 of 4 0.30Down
Virgin spermatheca4 ± 11 of 4 0.12Down
Mated spermatheca5 ± 10 of 4 0.17Down
Adult carcass8 ± 21 of 4 0.20Down
Larval CNS74 ± 74 of 4 2.19Up
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut5 ± 10 of 4 0.17Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut10 ± 00 of 4 0.29Down
Larval fat body10 ± 11 of 4 0.30Down
Larval trachea28 ± 44 of 4 0.84None
Larval carcass11 ± 21 of 4 0.34Down
S2 cells (growing)62 ± 24 of 4 1.84Up
Whole fly33 ± 14 of 4



(CG30001):

Annotation Number : CG30001
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050001
Gbrowse : chr2R:5709436-5710424 (-) // 100.0 //
Probeset : 1629262_at
Accessions : protein= NP_001137628; /// NP_724825;, nucleotide= NM_001144156; /// NM_165697;
FlyMine data for FBgn0050001.
VDRC has 4 RNAi stocks for FBgn0050001 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head4 ± 00 of 4 0.30Down
Eye5 ± 12 of 4 0.46Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland9 ± 30 of 4 0.74None
Crop4 ± 00 of 4 0.30Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.12Down
Fat body1 ± 00 of 4 0.08Down
Ovary27 ± 24 of 4 2.20Up
Testis5 ± 04 of 4 0.50Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.05Down
Mated spermatheca0 ± 00 of 4 0.02Down
Adult carcass3 ± 21 of 4 0.30Down
Larval CNS24 ± 24 of 4 1.91Up
Larval Salivary gland0 ± 00 of 4 0.05Down
Larval midgut4 ± 10 of 4 0.36Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.21Down
Larval fat body2 ± 10 of 4 0.20Down
Larval trachea8 ± 24 of 4 0.70None
Larval carcass6 ± 11 of 4 0.51Down
S2 cells (growing)32 ± 14 of 4 2.53Up
Whole fly12 ± 14 of 4

Looking for FBgn0050001. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime