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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050008 through 18771 annotations produced 1 hits


(CG30008):

Annotation Number : CG30008
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050008
Gbrowse : chr2R:5777402-5778625 (+) // 100.0 //
Probeset : 1633675_at
Accessions : protein= NP_724853;, nucleotide= NM_165718;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0050008.
BDGP gene expression has embryonic in situ data for CG30008: 4 pix of staining in 1 body parts.
Homophila reports that CG30008 is a close match (3e-22) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 3 RNAi stocks for FBgn0050008 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.00Down
Head8 ± 21 of 4 0.00Down
Eye3 ± 10 of 4 0.00Down
Thoracicoabdominal ganglion94 ± 744 of 4 0.10Down
Salivary gland19 ± 30 of 4 0.01Down
Crop19 ± 81 of 4 0.00Down
Midgut12 ± 11 of 4 0.00Down
Tubule153 ± 833 of 4 0.10Down
Hindgut26 ± 93 of 4 0.00Down
Heart6934 ± 5294 of 4 4.86Up
Fat body4979 ± 6724 of 4 3.49Up
Ovary6 ± 11 of 4 0.00Down
Testis33 ± 24 of 4 0.00Down
Male accessory glands32 ± 22 of 4 0.00Down
Virgin spermatheca7 ± 00 of 4 0.00Down
Mated spermatheca24 ± 82 of 4 0.02Down
Adult carcass5676 ± 1294 of 4 4.00Up
Larval CNS0 ± 00 of 4 0.00Down
Larval Salivary gland23 ± 34 of 4 0.02Down
Larval midgut13 ± 21 of 4 0.01Down
Larval tubule6 ± 20 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.00Down
Larval fat body14 ± 12 of 4 0.00Down
Larval trachea8 ± 101 of 4 0.01Down
Larval carcass209 ± 344 of 4 0.15Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly1427 ± 1534 of 4

Looking for FBgn0050008. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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