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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050010 through 18771 annotations produced 1 hits



(CG30010):

Annotation Number : CG30010
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050010
Gbrowse : chr2R:5751324-5752081 (+) // 100.0 //
Probeset : 1637118_at
Accessions : protein= NP_724847;, nucleotide= NM_165715;
FlyMine data for FBgn0050010.
BDGP gene expression has embryonic in situ data for CG30010: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0050010 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 ± 54 of 4 1.30Up
Head100 ± 84 of 4 1.30None
Eye102 ± 14 of 4 1.30Up
Thoracicoabdominal ganglion117 ± 34 of 4 1.50Up
Salivary gland117 ± 104 of 4 1.48Up
Crop84 ± 14 of 4 1.10None
Midgut115 ± 74 of 4 1.50Up
Tubule84 ± 24 of 4 1.10Up
Hindgut88 ± 24 of 4 1.10None
Heart100 ± 34 of 4 1.26Up
Fat body126 ± 94 of 4 1.60Up
Ovary97 ± 14 of 4 1.20Up
Testis10 ± 12 of 4 0.10Down
Male accessory glands32 ± 54 of 4 0.40Down
Virgin spermatheca162 ± 154 of 4 2.05Up
Mated spermatheca101 ± 44 of 4 1.28Up
Adult carcass95 ± 54 of 4 1.20None
Larval CNS72 ± 34 of 4 0.92None
Larval Salivary gland78 ± 54 of 4 0.99None
Larval midgut104 ± 53 of 4 1.31Up
Larval tubule123 ± 14 of 4 1.60Up
Larval hindgut82 ± 34 of 4 1.05None
Larval fat body125 ± 264 of 4 1.60None
Larval trachea75 ± 104 of 4 0.96None
Larval carcass57 ± 34 of 4 0.72Down
S2 cells (growing)68 ± 24 of 4 0.86None
Whole fly79 ± 44 of 4

Looking for FBgn0050010. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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