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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050021 through 18771 annotations produced 1 hits

menage a trois (metro):

Annotation Number : CG30021
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050021
Gbrowse : chr2R:7113961-7120006 (-) // 100.0 //
Probeset : 1633935_at
Accessions : protein= NP_001137642; /// NP_001137643; /// NP_610642;, nucleotide= NM_001144170; /// NM_001144171; /// NM_136798;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0004385 // guanylate kinase activity // inferred from sequence or structural similarity /// 0004385 // guanylate kinase
FlyMine data for FBgn0050021.
BDGP gene expression has embryonic in situ data for skf: 20 pix of staining in 6 body parts.
Homophila reports that CG30021 is a close match (2e-36) to human gene DLG3;MRX90;NEDLG;SAP102 (NP_065781), a gene associated with Mental retardation, X-linked-90 (3).
BioGrid reports that CG30021 interacts with CG32530 CG7662 .
TRiP has 1 RNAi stocks for FBgn0050021 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050021 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain579 74 of 4 7.10Up
Head213 114 of 4 2.60Up
Eye317 104 of 4 3.87Up
Thoracicoabdominal ganglion397 184 of 4 4.80Up
Salivary gland10 10 of 4 0.13Down
Crop114 84 of 4 1.40Up
Midgut18 24 of 4 0.20Down
Tubule7 10 of 4 0.10Down
Hindgut86 44 of 4 1.10None
Heart89 64 of 4 1.09None
Fat body17 44 of 4 0.21Down
Ovary52 24 of 4 0.60Down
Testis27 14 of 4 0.30Down
Male accessory glands28 33 of 4 0.40Down
Virgin spermatheca28 24 of 4 0.35Down
Mated spermatheca49 64 of 4 0.61Down
Adult carcass125 74 of 4 1.50Up
Larval CNS268 354 of 4 3.28Up
Larval Salivary gland5 11 of 4 0.06Down
Larval midgut17 14 of 4 0.21Down
Larval tubule5 01 of 4 0.10Down
Larval hindgut63 44 of 4 0.77Down
Larval fat body25 54 of 4 0.30Down
Larval trachea12 111 of 4 0.15Down
Larval carcass130 54 of 4 1.59Up
S2 cells (growing)5 11 of 4 0.07Down
Whole fly82 24 of 4

Looking for FBgn0050021. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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