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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050022 through 18771 annotations produced 2 hits



/// (CG30022 /// CR40100):

Annotation Number : CG40100
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050022 /// FBgn0058100
Gbrowse : chr2RHet:1142179-1142507 (+) // 100.0 // /// chr2R:7274876-7275564 (-) // 90.51 //
Probeset : 1632652_s_at
Accessions : protein= NP_001015327; /// NP_725047;, nucleotide= NM_001015327; /// NM_165830;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0050022 /// FBgn0058100.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 74 of 4 0.90None
Head120 ± 84 of 4 1.20None
Eye69 ± 94 of 4 0.73None
Thoracicoabdominal ganglion137 ± 34 of 4 1.40Up
Salivary gland129 ± 154 of 4 1.34None
Crop396 ± 174 of 4 4.10Up
Midgut212 ± 44 of 4 2.20Up
Tubule656 ± 144 of 4 6.80Up
Hindgut145 ± 104 of 4 1.50Up
Heart127 ± 44 of 4 1.32Up
Fat body145 ± 94 of 4 1.51Up
Ovary101 ± 34 of 4 1.00None
Testis35 ± 14 of 4 0.40Down
Male accessory glands127 ± 204 of 4 1.30None
Virgin spermatheca169 ± 104 of 4 1.76Up
Mated spermatheca146 ± 84 of 4 1.52Up
Adult carcass115 ± 94 of 4 1.20None
Larval CNS68 ± 24 of 4 0.71Down
Larval Salivary gland102 ± 84 of 4 1.06None
Larval midgut199 ± 44 of 4 2.07Up
Larval tubule431 ± 54 of 4 4.50Up
Larval hindgut295 ± 154 of 4 3.07Up
Larval fat body102 ± 154 of 4 1.10None
Larval trachea106 ± 34 of 4 1.10None
Larval carcass118 ± 74 of 4 1.23Up
S2 cells (growing)159 ± 84 of 4 1.65Up
Whole fly96 ± 34 of 4



(CG30022):

Annotation Number : CG30022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050022
Gbrowse : chr2R:7274820-7276282 (-) // 100.0 //
Probeset : 1628558_at
Accessions : protein= NP_725047;, nucleotide= NM_165830;
Interpro : 0016787 // hydrolase activity // inferred from electronic annotation
FlyMine data for FBgn0050022.
Homophila reports that CG30022 is a close match (2e-12) to human gene BRP17;DYT8;FPD1;KIPP1184;MR1;PDC;PNKD;TAHCCP2 (NP_056303), a gene associated with Paroxysmal nonkinesigenic dyskinesia, 118800 (3).
TRiP has 2 RNAi stocks for FBgn0050022 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050022 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain88 ± 04 of 4 0.70Down
Head144 ± 94 of 4 1.20None
Eye99 ± 54 of 4 0.84Down
Thoracicoabdominal ganglion110 ± 34 of 4 0.90None
Salivary gland114 ± 54 of 4 0.97None
Crop388 ± 74 of 4 3.30Up
Midgut376 ± 84 of 4 3.20Up
Tubule509 ± 294 of 4 4.30Up
Hindgut174 ± 34 of 4 1.50Up
Heart92 ± 24 of 4 0.78Down
Fat body102 ± 174 of 4 0.87None
Ovary99 ± 24 of 4 0.80Down
Testis30 ± 22 of 4 0.30Down
Male accessory glands109 ± 174 of 4 0.90None
Virgin spermatheca89 ± 24 of 4 0.76Down
Mated spermatheca89 ± 34 of 4 0.75Down
Adult carcass108 ± 54 of 4 0.90None
Larval CNS69 ± 54 of 4 0.59Down
Larval Salivary gland108 ± 34 of 4 0.92None
Larval midgut301 ± 34 of 4 2.55Up
Larval tubule438 ± 154 of 4 3.70Up
Larval hindgut206 ± 94 of 4 1.74Up
Larval fat body124 ± 174 of 4 1.00None
Larval trachea121 ± 154 of 4 1.02None
Larval carcass90 ± 64 of 4 0.76Down
S2 cells (growing)177 ± 54 of 4 1.50Up
Whole fly118 ± 24 of 4

Looking for FBgn0050022. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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