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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050026 through 18771 annotations produced 1 hits



(CG30026):

Annotation Number : CG30026
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050026
Gbrowse : chr2R:7296167-7296939 (-) // 100.0 //
Probeset : 1631370_at
Accessions : protein= NP_725049;, nucleotide= NM_165832;
FlyMine data for FBgn0050026.
VDRC has 4 RNAi stocks for FBgn0050026 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain10 14 of 4 0.10Down
Head236 134 of 4 2.40Up
Eye99 244 of 4 1.00None
Thoracicoabdominal ganglion7 12 of 4 0.10Down
Salivary gland9 20 of 4 0.10Down
Crop14 33 of 4 0.10Down
Midgut197 124 of 4 2.00Up
Tubule29 83 of 4 0.30Down
Hindgut25 14 of 4 0.30Down
Heart232 284 of 4 2.35Up
Fat body516 764 of 4 5.22Up
Ovary21 14 of 4 0.20Down
Testis214 144 of 4 2.20Up
Male accessory glands97 84 of 4 1.00None
Virgin spermatheca579 234 of 4 5.85Up
Mated spermatheca391 534 of 4 3.95Up
Adult carcass238 114 of 4 2.40Up
Larval CNS1 10 of 4 0.02Down
Larval Salivary gland15 33 of 4 0.15Down
Larval midgut6 01 of 4 0.06Down
Larval tubule6 12 of 4 0.10Down
Larval hindgut6 02 of 4 0.06Down
Larval fat body39 84 of 4 0.40Down
Larval trachea8 42 of 4 0.08Down
Larval carcass3 10 of 4 0.04Down
S2 cells (growing)3 11 of 4 0.04Down
Whole fly99 124 of 4

Looking for FBgn0050026. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime