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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050036 through 18771 annotations produced 1 hits



(CG30036):

Annotation Number : CG30036
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050036
Gbrowse : chr2R:7865232-7866454 (-) // 100.0 //
Probeset : 1637543_at
Accessions : protein= NP_725096;, nucleotide= NM_165858;
Pathway : 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : "0008378 // galactosyltransferase activity // inferred from electronic annotation /// 0008499 // UDP-galactose:beta-N-ac
FlyMine data for FBgn0050036.
Homophila reports that CG30036 is a close match (2e-16) to human gene B3GALT3;GLCT3;P (NP_149359), a gene associated with [Blood group, P system], 111400 (3);{Urinary tract infection, susceptibility to} (1).
VDRC has 1 RNAi stocks for FBgn0050036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.50None
Head3 ± 10 of 4 0.40Down
Eye2 ± 10 of 4 0.39Down
Thoracicoabdominal ganglion5 ± 11 of 4 0.70None
Salivary gland5 ± 10 of 4 0.81None
Crop6 ± 11 of 4 0.90None
Midgut10 ± 12 of 4 1.50None
Tubule8 ± 10 of 4 1.20None
Hindgut6 ± 02 of 4 0.90None
Heart3 ± 00 of 4 0.56None
Fat body8 ± 32 of 4 1.23None
Ovary4 ± 10 of 4 0.60None
Testis30 ± 04 of 4 4.40Up
Male accessory glands5 ± 20 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 0.54None
Mated spermatheca5 ± 10 of 4 0.82None
Adult carcass9 ± 41 of 4 1.40None
Larval CNS4 ± 21 of 4 0.65None
Larval Salivary gland5 ± 20 of 4 0.81None
Larval midgut9 ± 02 of 4 1.29None
Larval tubule6 ± 12 of 4 0.90None
Larval hindgut4 ± 00 of 4 0.59None
Larval fat body14 ± 21 of 4 2.00Up
Larval trachea4 ± 10 of 4 0.64None
Larval carcass5 ± 10 of 4 0.84None
S2 cells (growing)4 ± 00 of 4 0.63None
Whole fly7 ± 13 of 4

Looking for FBgn0050036. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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