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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050039 through 18771 annotations produced 1 hits



(CG30039):

Annotation Number : CG30039
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050039
Gbrowse : chr2R:7938479-7939260 (-) // 100.0 //
Probeset : 1623539_at
Accessions : protein= NP_725100;, nucleotide= NM_165862;
FlyMine data for FBgn0050039.
BDGP gene expression has embryonic in situ data for CG30039: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0050039 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.00Down
Head3 00 of 4 0.00Down
Eye2 10 of 4 0.01Down
Thoracicoabdominal ganglion4 10 of 4 0.00Down
Salivary gland14 10 of 4 0.05Down
Crop6 11 of 4 0.00Down
Midgut2 10 of 4 0.00Down
Tubule6 01 of 4 0.00Down
Hindgut4 21 of 4 0.00Down
Heart2 00 of 4 0.01Down
Fat body2 10 of 4 0.01Down
Ovary2 10 of 4 0.00Down
Testis2514 1024 of 4 8.40Up
Male accessory glands10 21 of 4 0.00Down
Virgin spermatheca4 20 of 4 0.01Down
Mated spermatheca3 10 of 4 0.01Down
Adult carcass13 62 of 4 0.00Down
Larval CNS4 00 of 4 0.01Down
Larval Salivary gland6 10 of 4 0.02Down
Larval midgut7 20 of 4 0.02Down
Larval tubule6 10 of 4 0.00Down
Larval hindgut5 11 of 4 0.02Down
Larval fat body388 2134 of 4 1.30None
Larval trachea16 262 of 4 0.06Down
Larval carcass5 10 of 4 0.02Down
S2 cells (growing)3 00 of 4 0.01Down
Whole fly300 294 of 4

Looking for FBgn0050039. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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