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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050044 through 18771 annotations produced 2 hits



stanley-cup (s-cup):

Annotation Number : CT32394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050044
Gbrowse : chr2R:8383342-8383708 (+) // 100.0 //
Probeset : 1636053_s_at
Accessions : protein= NP_610792; /// NP_788336;, nucleotide= NM_136948; /// NM_176156;
FlyMine data for FBgn0050044.
TRiP has 1 RNAi stocks for FBgn0050044 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 14 of 4 1.80Up
Head7 02 of 4 0.70None
Eye7 13 of 4 0.75None
Thoracicoabdominal ganglion8 20 of 4 0.90None
Salivary gland8 40 of 4 0.81None
Crop8 20 of 4 0.80None
Midgut2 00 of 4 0.20Down
Tubule1 00 of 4 0.20Down
Hindgut2 00 of 4 0.20Down
Heart2 10 of 4 0.28Down
Fat body11 21 of 4 1.15None
Ovary2 10 of 4 0.30Down
Testis50 44 of 4 4.90Up
Male accessory glands6 10 of 4 0.60None
Virgin spermatheca1 00 of 4 0.18Down
Mated spermatheca3 10 of 4 0.34Down
Adult carcass8 20 of 4 0.80None
Larval CNS10 42 of 4 1.03None
Larval Salivary gland8 10 of 4 0.84None
Larval midgut4 10 of 4 0.43Down
Larval tubule3 10 of 4 0.30Down
Larval hindgut2 00 of 4 0.24Down
Larval fat body11 11 of 4 1.10None
Larval trachea3 20 of 4 0.36Down
Larval carcass4 20 of 4 0.42None
S2 cells (growing)7 10 of 4 0.69None
Whole fly10 12 of 4



stanley-cup (s-cup):

Annotation Number : CG30044
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050044
Gbrowse : chr2R:8383029-8388972 (+) // 100.0 //
Probeset : 1628708_at
Accessions : protein= NP_610792; /// NP_788336;, nucleotide= NM_136948; /// NM_176156;
FlyMine data for FBgn0050044.
BioGrid reports that CG30044 interacts with CG6151 CG8981 CG5271 .
TRiP has 1 RNAi stocks for FBgn0050044 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050044 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 14 of 4 3.20Up
Head46 44 of 4 3.30Up
Eye19 62 of 4 1.37None
Thoracicoabdominal ganglion21 04 of 4 1.50None
Salivary gland10 50 of 4 0.72None
Crop7 00 of 4 0.50None
Midgut6 10 of 4 0.40None
Tubule3 00 of 4 0.30Down
Hindgut2 10 of 4 0.20Down
Heart6 10 of 4 0.43None
Fat body8 31 of 4 0.62None
Ovary2 00 of 4 0.20Down
Testis35 14 of 4 2.40Up
Male accessory glands2 00 of 4 0.20Down
Virgin spermatheca4 20 of 4 0.29Down
Mated spermatheca4 10 of 4 0.29Down
Adult carcass19 33 of 4 1.40None
Larval CNS6 21 of 4 0.43None
Larval Salivary gland12 21 of 4 0.86None
Larval midgut7 10 of 4 0.51None
Larval tubule4 10 of 4 0.30Down
Larval hindgut5 10 of 4 0.40Down
Larval fat body16 42 of 4 1.10None
Larval trachea3 20 of 4 0.25Down
Larval carcass9 11 of 4 0.65None
S2 cells (growing)1 10 of 4 0.14Down
Whole fly14 24 of 4

Looking for FBgn0050044. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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