Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050047 through 18771 annotations produced 1 hits



(CG30047):

Annotation Number : CG30047
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050047
Gbrowse : chr2R:8239345-8242797 (+) // 100.0 //
Probeset : 1634486_at
Accessions : protein= NP_725141;, nucleotide= NM_165887;
Interpro : 0008233 // peptidase activity // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from
FlyMine data for FBgn0050047.
VDRC has 2 RNAi stocks for FBgn0050047 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head2 10 of 4 0.00Down
Eye2 00 of 4 0.05Down
Thoracicoabdominal ganglion3 00 of 4 0.10Down
Salivary gland5 10 of 4 0.13Down
Crop1 00 of 4 0.00Down
Midgut182 274 of 4 4.20Up
Tubule32 113 of 4 0.80None
Hindgut795 234 of 418.50Up
Heart1 00 of 4 0.04Down
Fat body2 30 of 4 0.07Down
Ovary3 11 of 4 0.10Down
Testis2 00 of 4 0.10Down
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca3 10 of 4 0.09Down
Mated spermatheca1 00 of 4 0.03Down
Adult carcass5 20 of 4 0.10Down
Larval CNS8 14 of 4 0.20Down
Larval Salivary gland1 00 of 4 0.04Down
Larval midgut513 304 of 411.96Up
Larval tubule20 83 of 4 0.50None
Larval hindgut279 174 of 4 6.51Up
Larval fat body4 10 of 4 0.10Down
Larval trachea2 10 of 4 0.06Down
Larval carcass3 10 of 4 0.08Down
S2 cells (growing)14 04 of 4 0.34Down
Whole fly42 54 of 4

Looking for FBgn0050047. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime