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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050050 through 18771 annotations produced 1 hits



(CG30050):

Annotation Number : CG30050
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050050
Gbrowse : chr2R:8296400-8297159 (+) // 100.0 //
Probeset : 1633921_at
Accessions : protein= NP_725159;, nucleotide= NM_165897;
FlyMine data for FBgn0050050.
VDRC has 3 RNAi stocks for FBgn0050050 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.80None
Head96 44 of 434.00Up
Eye527 284 of 4185.00Up
Thoracicoabdominal ganglion2 10 of 4 0.80None
Salivary gland1 00 of 4 0.65None
Crop0 00 of 4 0.20Down
Midgut2 10 of 4 1.00None
Tubule2 00 of 4 1.00None
Hindgut1 00 of 4 0.50None
Heart0 00 of 4 0.23Down
Fat body5 30 of 4 1.80None
Ovary0 00 of 4 0.30Down
Testis2 10 of 4 0.90None
Male accessory glands8 00 of 4 2.90Up
Virgin spermatheca2 10 of 4 0.74None
Mated spermatheca2 10 of 4 0.89None
Adult carcass4 20 of 4 1.40None
Larval CNS1 10 of 4 0.62None
Larval Salivary gland3 10 of 4 1.12None
Larval midgut1 00 of 4 0.52Down
Larval tubule1 00 of 4 0.30Down
Larval hindgut0 00 of 4 0.29Down
Larval fat body3 10 of 4 1.10None
Larval trachea5 91 of 4 2.07None
Larval carcass2 10 of 4 0.77None
S2 cells (growing)0 00 of 4 0.17Down
Whole fly2 00 of 4

Looking for FBgn0050050. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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