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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050052 through 18771 annotations produced 1 hits



Odorant-binding protein 49a (Obp49a):

Annotation Number : CG30052
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050052
Gbrowse : chr2R:8577563-8578436 (-) // 100.0 //
Probeset : 1624932_at
Accessions : protein= NP_610812;, nucleotide= NM_136968;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded
FlyMine data for FBgn0050052.
BDGP gene expression has embryonic in situ data for Obp49a: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 ± 34 of 4 0.40Down
Head1163 ± 1124 of 4 9.40Up
Eye24 ± 14 of 4 0.19Down
Thoracicoabdominal ganglion83 ± 34 of 4 0.70None
Salivary gland11 ± 41 of 4 0.09Down
Crop5 ± 10 of 4 0.00Down
Midgut4 ± 10 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut4 ± 11 of 4 0.00Down
Heart3 ± 10 of 4 0.02Down
Fat body1 ± 10 of 4 0.02Down
Ovary3 ± 11 of 4 0.00Down
Testis12 ± 14 of 4 0.10Down
Male accessory glands12 ± 01 of 4 0.10Down
Virgin spermatheca4 ± 11 of 4 0.03Down
Mated spermatheca2 ± 00 of 4 0.02Down
Adult carcass364 ± 174 of 4 2.90Up
Larval CNS14 ± 34 of 4 0.12Down
Larval Salivary gland11 ± 31 of 4 0.09Down
Larval midgut61 ± 74 of 4 0.50Down
Larval tubule5 ± 10 of 4 0.00Down
Larval hindgut9 ± 01 of 4 0.08Down
Larval fat body157 ± 434 of 4 1.30None
Larval trachea2 ± 10 of 4 0.02Down
Larval carcass10 ± 51 of 4 0.09Down
S2 cells (growing)7 ± 13 of 4 0.06Down
Whole fly124 ± 164 of 4

Looking for FBgn0050052. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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