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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050053 through 18771 annotations produced 1 hits



(CG30053):

Annotation Number : CG30053
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050053
Gbrowse : chr2R:8576299-8577363 (-) // 100.0 //
Probeset : 1639546_at
Accessions : protein= NP_725221;, nucleotide= NM_165945;
FlyMine data for FBgn0050053.
VDRC has 4 RNAi stocks for FBgn0050053 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain32 ± 34 of 454.30Up
Head6 ± 10 of 410.60Up
Eye1 ± 00 of 4 2.67None
Thoracicoabdominal ganglion58 ± 64 of 497.90Up
Salivary gland9 ± 30 of 415.58None
Crop0 ± 00 of 4 1.10None
Midgut0 ± 00 of 4 1.20None
Tubule0 ± 00 of 4 1.50None
Hindgut0 ± 00 of 4 0.80None
Heart0 ± 00 of 4 0.62None
Fat body0 ± 00 of 4 1.04None
Ovary0 ± 00 of 4 0.70None
Testis1 ± 00 of 4 1.60None
Male accessory glands1 ± 00 of 4 1.80None
Virgin spermatheca1 ± 00 of 4 1.92None
Mated spermatheca0 ± 00 of 4 1.04None
Adult carcass1 ± 00 of 4 2.50None
Larval CNS19 ± 34 of 433.04Up
Larval Salivary gland1 ± 00 of 4 2.21Up
Larval midgut0 ± 00 of 4 1.21None
Larval tubule0 ± 00 of 4 1.10None
Larval hindgut0 ± 00 of 4 1.13None
Larval fat body0 ± 00 of 4 1.00None
Larval trachea1 ± 10 of 4 3.00None
Larval carcass0 ± 00 of 4 1.50None
S2 cells (growing)1 ± 00 of 4 2.25None
Whole fly0 ± 00 of 4

Looking for FBgn0050053. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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