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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050055 through 18771 annotations produced 1 hits



(CR30055):

Annotation Number : CG30055
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050055
Gbrowse : chr2R:8476807-8478216 (+) // 100.0 //
Probeset : 1629821_at
Accessions : protein= NP_725190;, nucleotide= NM_165918;
FlyMine data for FBgn0050055.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain190 24 of 4 1.40Up
Head131 84 of 4 0.90None
Eye212 44 of 4 1.53Up
Thoracicoabdominal ganglion122 14 of 4 0.90None
Salivary gland100 34 of 4 0.72Down
Crop169 54 of 4 1.20Up
Midgut87 54 of 4 0.60Down
Tubule66 34 of 4 0.50Down
Hindgut138 24 of 4 1.00None
Heart117 74 of 4 0.85None
Fat body101 114 of 4 0.73Down
Ovary315 34 of 4 2.30Up
Testis14 10 of 4 0.10Down
Male accessory glands210 94 of 4 1.50Up
Virgin spermatheca66 14 of 4 0.48Down
Mated spermatheca69 64 of 4 0.50Down
Adult carcass119 24 of 4 0.90None
Larval CNS56 74 of 4 0.40Down
Larval Salivary gland35 24 of 4 0.26Down
Larval midgut35 31 of 4 0.25Down
Larval tubule31 04 of 4 0.20Down
Larval hindgut55 34 of 4 0.40Down
Larval fat body23 21 of 4 0.20Down
Larval trachea125 144 of 4 0.90None
Larval carcass58 24 of 4 0.42Down
S2 cells (growing)52 14 of 4 0.38Down
Whole fly139 74 of 4

Looking for FBgn0050055. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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