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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050062 through 18771 annotations produced 1 hits



(CG30062):

Annotation Number : CG30062
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050062
Gbrowse : chr2R:9333221-9333843 (-) // 100.0 //
Probeset : 1628508_at
Accessions : protein= NP_725299;, nucleotide= NM_165992;
Interpro : "0003796 // lysozyme activity // inferred from sequence or structural similarity /// 0003796 // lysozyme activity // inf
FlyMine data for FBgn0050062.
Homophila reports that CG30062 is a close match (4e-15) to human gene LYZ (NP_000230), a gene associated with Amyloidosis, renal, 105200 (3).
VDRC has 2 RNAi stocks for FBgn0050062 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head10 13 of 4 4.70Up
Eye8 13 of 4 3.63Up
Thoracicoabdominal ganglion2 00 of 4 0.90None
Salivary gland7 30 of 4 3.16None
Crop5 10 of 4 2.30None
Midgut1 00 of 4 0.60None
Tubule1 00 of 4 0.60Down
Hindgut4 00 of 4 1.80None
Heart3 01 of 4 1.52None
Fat body4 20 of 4 1.91None
Ovary0 00 of 4 0.30None
Testis1 00 of 4 0.80None
Male accessory glands2 00 of 4 0.90None
Virgin spermatheca2 00 of 4 0.87None
Mated spermatheca4 10 of 4 1.77None
Adult carcass20 00 of 4 9.00Up
Larval CNS2 10 of 4 0.98None
Larval Salivary gland4 10 of 4 1.74None
Larval midgut1 00 of 4 0.77None
Larval tubule3 00 of 4 1.30None
Larval hindgut2 10 of 4 1.13None
Larval fat body3 10 of 4 1.70None
Larval trachea5 30 of 4 2.32None
Larval carcass3 10 of 4 1.37None
S2 cells (growing)6 10 of 4 3.01Up
Whole fly2 00 of 4

Looking for FBgn0050062. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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