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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050069 through 18771 annotations produced 1 hits



(CG30069):

Annotation Number : CG30069
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050069
Gbrowse : chr2R:10073323-10085881 (+) // 100.0 //
Probeset : 1635730_at
Accessions : protein= NP_610937;, nucleotide= NM_137093;
FlyMine data for FBgn0050069.
VDRC has 3 RNAi stocks for FBgn0050069 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain203 ± 54 of 4 2.20Up
Head272 ± 174 of 4 3.00Up
Eye177 ± 144 of 4 1.94Up
Thoracicoabdominal ganglion303 ± 144 of 4 3.30Up
Salivary gland308 ± 364 of 4 3.38Up
Crop804 ± 394 of 4 8.80Up
Midgut146 ± 24 of 4 1.60Up
Tubule119 ± 54 of 4 1.30Up
Hindgut504 ± 124 of 4 5.50Up
Heart105 ± 84 of 4 1.15None
Fat body161 ± 94 of 4 1.76Up
Ovary20 ± 24 of 4 0.20Down
Testis30 ± 34 of 4 0.30Down
Male accessory glands136 ± 64 of 4 1.50Up
Virgin spermatheca169 ± 44 of 4 1.85Up
Mated spermatheca221 ± 184 of 4 2.43Up
Adult carcass226 ± 94 of 4 2.50Up
Larval CNS199 ± 264 of 4 2.19Up
Larval Salivary gland869 ± 364 of 4 9.52Up
Larval midgut300 ± 144 of 4 3.29Up
Larval tubule98 ± 54 of 4 1.10None
Larval hindgut606 ± 144 of 4 6.63Up
Larval fat body90 ± 34 of 4 1.00None
Larval trachea1146 ± 714 of 412.54Up
Larval carcass929 ± 194 of 410.18Up
S2 cells (growing)144 ± 54 of 4 1.58Up
Whole fly91 ± 34 of 4

Looking for FBgn0050069. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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