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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050072 through 18771 annotations produced 2 hits



Odorant-binding protein 50b (Obp50b):

Annotation Number : CG30073
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050073
Gbrowse : chr2R:10258753-10259524 (+) // 100.0 //
Probeset : 1629706_at
Accessions : protein= NP_725386;, nucleotide= NM_166051;
Interpro : 0005549 // odorant binding // not recorded
FlyMine data for FBgn0050073.
VDRC has 2 RNAi stocks for FBgn0050073 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.20Down
Head3 11 of 4 0.20Down
Eye1 00 of 4 0.08Down
Thoracicoabdominal ganglion10 10 of 4 0.70None
Salivary gland17 40 of 4 1.12None
Crop8 10 of 4 0.60None
Midgut2 00 of 4 0.10Down
Tubule11 11 of 4 0.70Down
Hindgut6 20 of 4 0.40Down
Heart0 00 of 4 0.04Down
Fat body6 30 of 4 0.43Down
Ovary2 00 of 4 0.20Down
Testis89 44 of 4 5.90Up
Male accessory glands10 20 of 4 0.70None
Virgin spermatheca7 20 of 4 0.52Down
Mated spermatheca6 00 of 4 0.46Down
Adult carcass17 40 of 4 1.20None
Larval CNS6 11 of 4 0.40Down
Larval Salivary gland3 10 of 4 0.25Down
Larval midgut3 20 of 4 0.25Down
Larval tubule12 31 of 4 0.80None
Larval hindgut5 20 of 4 0.35Down
Larval fat body16 22 of 4 1.10None
Larval trachea3 30 of 4 0.22Down
Larval carcass6 11 of 4 0.41Down
S2 cells (growing)7 12 of 4 0.52Down
Whole fly15 24 of 4



Odorant-binding protein 50c (Obp50c):

Annotation Number : CG30072
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050072
Gbrowse : chr2R:10259802-10260479 (+) // 100.0 //
Probeset : 1633837_at
Accessions : protein= NP_725386; /// NP_725387;, nucleotide= NM_166051; /// NM_166052;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded
FlyMine data for FBgn0050072.
VDRC has 3 RNAi stocks for FBgn0050072 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head5 10 of 4 0.20Down
Eye3 10 of 4 0.10Down
Thoracicoabdominal ganglion3 10 of 4 0.10Down
Salivary gland10 30 of 4 0.30Down
Crop4 00 of 4 0.10Down
Midgut11 30 of 4 0.30Down
Tubule7 00 of 4 0.20Down
Hindgut6 00 of 4 0.20Down
Heart4 10 of 4 0.14Down
Fat body12 30 of 4 0.38Down
Ovary4 00 of 4 0.10Down
Testis304 64 of 4 9.10Up
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca7 21 of 4 0.22Down
Mated spermatheca7 10 of 4 0.21Down
Adult carcass8 20 of 4 0.20Down
Larval CNS7 10 of 4 0.21Down
Larval Salivary gland3 10 of 4 0.10Down
Larval midgut11 10 of 4 0.35Down
Larval tubule8 21 of 4 0.30Down
Larval hindgut4 10 of 4 0.13Down
Larval fat body36 122 of 4 1.10None
Larval trachea3 30 of 4 0.10Down
Larval carcass8 20 of 4 0.25Down
S2 cells (growing)3 00 of 4 0.09Down
Whole fly33 24 of 4

Looking for FBgn0050072. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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