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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050075 through 18771 annotations produced 1 hits



(CG30075):

Annotation Number : CG30075
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050075
Gbrowse : chr2R:10263523-10264111 (+) // 100.0 //
Probeset : 1640511_at
Accessions : protein= NP_725390;, nucleotide= NM_166054;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0050075.
VDRC has 3 RNAi stocks for FBgn0050075 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.20Down
Head3 ± 10 of 4 0.20Down
Eye3 ± 10 of 4 0.25Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland7 ± 30 of 4 0.48None
Crop4 ± 00 of 4 0.30Down
Midgut5 ± 21 of 4 0.40Down
Tubule3 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.40Down
Heart0 ± 00 of 4 0.04Down
Fat body6 ± 10 of 4 0.44Down
Ovary3 ± 10 of 4 0.20Down
Testis167 ± 44 of 411.40Up
Male accessory glands6 ± 10 of 4 0.40Down
Virgin spermatheca3 ± 10 of 4 0.26Down
Mated spermatheca5 ± 10 of 4 0.38Down
Adult carcass8 ± 30 of 4 0.50None
Larval CNS2 ± 10 of 4 0.19Down
Larval Salivary gland6 ± 10 of 4 0.44Down
Larval midgut7 ± 10 of 4 0.53Down
Larval tubule4 ± 00 of 4 0.30Down
Larval hindgut1 ± 00 of 4 0.12Down
Larval fat body40 ± 114 of 4 2.80None
Larval trachea3 ± 30 of 4 0.24Down
Larval carcass3 ± 10 of 4 0.27Down
S2 cells (growing)3 ± 00 of 4 0.24Down
Whole fly14 ± 14 of 4

Looking for FBgn0050075. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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