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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050082 through 18771 annotations produced 1 hits



():

Annotation Number : CG30082
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050082
Gbrowse : chr2R:11572508-11573205 (-) // 100.0 //
Probeset : 1638799_at
Accessions : protein= , nucleotide=
FlyMine data for FBgn0050082.
VDRC has 2 RNAi stocks for FBgn0050082 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head17 ± 23 of 4 2.40Up
Eye49 ± 44 of 4 6.95Up
Thoracicoabdominal ganglion9 ± 31 of 4 1.40None
Salivary gland12 ± 40 of 4 1.81None
Crop11 ± 11 of 4 1.60Up
Midgut40 ± 64 of 4 5.70Up
Tubule7 ± 00 of 4 1.10None
Hindgut6 ± 10 of 4 0.90None
Heart2 ± 10 of 4 0.40None
Fat body13 ± 81 of 4 1.96None
Ovary3 ± 00 of 4 0.40Down
Testis12 ± 13 of 4 1.80Up
Male accessory glands4 ± 10 of 4 0.60None
Virgin spermatheca24 ± 24 of 4 3.52Up
Mated spermatheca34 ± 103 of 4 4.87None
Adult carcass6 ± 20 of 4 0.90None
Larval CNS8 ± 02 of 4 1.25Up
Larval Salivary gland9 ± 11 of 4 1.35None
Larval midgut95 ± 44 of 413.54Up
Larval tubule34 ± 14 of 4 4.80Up
Larval hindgut22 ± 24 of 4 3.11Up
Larval fat body19 ± 13 of 4 2.70Up
Larval trachea6 ± 31 of 4 0.88None
Larval carcass5 ± 00 of 4 0.79None
S2 cells (growing)9 ± 01 of 4 1.39Up
Whole fly7 ± 01 of 4

Looking for FBgn0050082. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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