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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050083 through 18771 annotations produced 1 hits



(CG30083):

Annotation Number : CG30083
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050083
Gbrowse : chr2R:11599127-11600099 (-) // 100.0 //
Probeset : 1635033_at
Accessions : protein= NP_725492;, nucleotide= NM_166116;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050083.
Homophila reports that CG30083 is a close match (6e-11) to human gene F12;HAE3;HAF (NP_000496), a gene associated with Angioedema, hereditary, type III, 610618 (3);Factor XII deficiency, 234000 (3).
VDRC has 3 RNAi stocks for FBgn0050083 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.20Down
Head255 ± 524 of 412.60Up
Eye165 ± 384 of 4 8.17Up
Thoracicoabdominal ganglion3 ± 10 of 4 0.20Down
Salivary gland9 ± 40 of 4 0.45None
Crop5 ± 10 of 4 0.20Down
Midgut13 ± 00 of 4 0.70None
Tubule3 ± 00 of 4 0.20Down
Hindgut5 ± 10 of 4 0.20Down
Heart225 ± 274 of 411.10Up
Fat body237 ± 554 of 411.71Up
Ovary0 ± 00 of 4 0.00Down
Testis3 ± 00 of 4 0.20Down
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca257 ± 284 of 412.71Up
Mated spermatheca136 ± 254 of 4 6.74Up
Adult carcass74 ± 64 of 4 3.70Up
Larval CNS1 ± 10 of 4 0.08Down
Larval Salivary gland2 ± 00 of 4 0.10Down
Larval midgut6 ± 20 of 4 0.31Down
Larval tubule6 ± 10 of 4 0.30Down
Larval hindgut3 ± 00 of 4 0.15Down
Larval fat body754 ± 1474 of 437.20Up
Larval trachea4 ± 40 of 4 0.21Down
Larval carcass3 ± 00 of 4 0.16Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly20 ± 31 of 4

Looking for FBgn0050083. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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