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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050087 through 18771 annotations produced 1 hits



(CG30087):

Annotation Number : CG30087
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050087
Gbrowse : chr2R:11580242-11581384 (+) // 100.0 //
Probeset : 1636823_at
Accessions : protein= NP_725489;, nucleotide= NM_166114;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050087.
Homophila reports that CG30087 is a close match (5e-11) to human gene F7 (NP_062562), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0050087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 2.60None
Head2 ± 00 of 4 3.50None
Eye3 ± 10 of 4 4.73None
Thoracicoabdominal ganglion0 ± 00 of 4 1.00None
Salivary gland7 ± 30 of 412.04None
Crop2 ± 20 of 4 4.40None
Midgut1 ± 00 of 4 1.50None
Tubule2 ± 00 of 4 3.60Up
Hindgut1 ± 00 of 4 2.00None
Heart0 ± 00 of 4 0.50None
Fat body0 ± 00 of 4 1.31None
Ovary1 ± 00 of 4 1.70None
Testis13 ± 13 of 419.90Up
Male accessory glands3 ± 20 of 4 5.00None
Virgin spermatheca2 ± 10 of 4 3.62None
Mated spermatheca1 ± 00 of 4 1.50None
Adult carcass1 ± 00 of 4 2.20None
Larval CNS0 ± 00 of 4 1.04None
Larval Salivary gland1 ± 00 of 4 2.42None
Larval midgut1 ± 00 of 4 2.54None
Larval tubule0 ± 00 of 4 1.10None
Larval hindgut1 ± 10 of 4 2.35None
Larval fat body3 ± 20 of 4 5.70None
Larval trachea2 ± 20 of 4 3.50None
Larval carcass1 ± 00 of 4 3.04None
S2 cells (growing)1 ± 00 of 4 1.77None
Whole fly0 ± 00 of 4

Looking for FBgn0050087. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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