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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050090 through 18771 annotations produced 1 hits



(CG30090):

Annotation Number : CG30090
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050090
Gbrowse : chr2R:11577347-11578519 (+) // 100.0 //
Probeset : 1636154_at
Accessions : protein= NP_725487;, nucleotide= NM_166112;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050090.
BDGP gene expression has embryonic in situ data for CG30090: 4 pix of staining in 1 body parts.
Homophila reports that CG30090 is a close match (2e-11) to human gene ELA2 (NP_001963), a gene associated with Hematopoiesis, cyclic, 162800 (3);Neutropenia, congenital, 202700 (3).
VDRC has 3 RNAi stocks for FBgn0050090 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head30 ± 44 of 4 2.60Up
Eye27 ± 44 of 4 2.34Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland4 ± 10 of 4 0.36Down
Crop4 ± 10 of 4 0.30Down
Midgut117 ± 104 of 410.00Up
Tubule4 ± 00 of 4 0.40Down
Hindgut16 ± 31 of 4 1.40None
Heart23 ± 14 of 4 1.95Up
Fat body89 ± 134 of 4 7.58Up
Ovary0 ± 00 of 4 0.10Down
Testis45 ± 24 of 4 3.90Up
Male accessory glands6 ± 20 of 4 0.50None
Virgin spermatheca45 ± 34 of 4 3.88Up
Mated spermatheca21 ± 24 of 4 1.80Up
Adult carcass27 ± 21 of 4 2.30Up
Larval CNS1 ± 10 of 4 0.09Down
Larval Salivary gland3 ± 10 of 4 0.30Down
Larval midgut7 ± 10 of 4 0.67None
Larval tubule12 ± 11 of 4 1.00None
Larval hindgut15 ± 52 of 4 1.33None
Larval fat body249 ± 444 of 421.20Up
Larval trachea6 ± 21 of 4 0.56Down
Larval carcass12 ± 04 of 4 1.09None
S2 cells (growing)108 ± 104 of 4 9.20Up
Whole fly11 ± 02 of 4

Looking for FBgn0050090. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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