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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050101 through 18771 annotations produced 2 hits



(CG30101):

Annotation Number : CG30101
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050101
Gbrowse : chr2R:13295899-13297705 (-) // 100.0 //
Probeset : 1633217_at
Accessions : protein= NP_611205;, nucleotide= NM_137361;
FlyMine data for FBgn0050101.
BDGP gene expression has embryonic in situ data for CG30101: 49 pix of staining in 11 body parts.
BioGrid reports that CG30101 interacts with CG3937 CG7838 CG8409 .
TRiP has 1 RNAi stocks for FBgn0050101 available for purchase.
VDRC has 1 RNAi stocks for FBgn0050101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head15 ± 12 of 4 0.70Down
Eye79 ± 24 of 4 3.70Up
Thoracicoabdominal ganglion4 ± 10 of 4 0.20Down
Salivary gland12 ± 10 of 4 0.59Down
Crop5 ± 10 of 4 0.20Down
Midgut3 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.10Down
Hindgut9 ± 10 of 4 0.40Down
Heart3 ± 00 of 4 0.14Down
Fat body10 ± 40 of 4 0.49Down
Ovary10 ± 03 of 4 0.50Down
Testis25 ± 34 of 4 1.20None
Male accessory glands5 ± 20 of 4 0.20Down
Virgin spermatheca4 ± 10 of 4 0.19Down
Mated spermatheca3 ± 10 of 4 0.15Down
Adult carcass12 ± 40 of 4 0.60None
Larval CNS7 ± 22 of 4 0.35Down
Larval Salivary gland6 ± 00 of 4 0.29Down
Larval midgut10 ± 21 of 4 0.50Down
Larval tubule4 ± 00 of 4 0.20Down
Larval hindgut7 ± 00 of 4 0.34Down
Larval fat body9 ± 11 of 4 0.50Down
Larval trachea6 ± 31 of 4 0.32Down
Larval carcass20 ± 04 of 4 0.93None
S2 cells (growing)9 ± 10 of 4 0.42Down
Whole fly21 ± 13 of 4



(CG30101):

Annotation Number : CT34188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050101
Gbrowse : chr2R:13295899-13296101 (-) // 100.0 //
Probeset : 1639466_s_at
Accessions : protein= NP_611205;, nucleotide= NM_137361;
FlyMine data for FBgn0050101.
BDGP gene expression has embryonic in situ data for CG30101: 49 pix of staining in 11 body parts.
TRiP has 1 RNAi stocks for FBgn0050101 available for purchase.
VDRC has 1 RNAi stocks for FBgn0050101 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head11 ± 14 of 4 1.60None
Eye67 ± 14 of 4 9.20Up
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland11 ± 40 of 4 1.56None
Crop3 ± 10 of 4 0.50None
Midgut0 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.40Down
Hindgut3 ± 00 of 4 0.40None
Heart4 ± 20 of 4 0.67None
Fat body4 ± 10 of 4 0.57None
Ovary3 ± 00 of 4 0.50None
Testis15 ± 24 of 4 2.10Up
Male accessory glands5 ± 20 of 4 0.70None
Virgin spermatheca2 ± 10 of 4 0.40None
Mated spermatheca2 ± 00 of 4 0.28None
Adult carcass7 ± 41 of 4 1.00None
Larval CNS1 ± 00 of 4 0.16Down
Larval Salivary gland2 ± 00 of 4 0.29None
Larval midgut0 ± 00 of 4 0.09Down
Larval tubule2 ± 10 of 4 0.30None
Larval hindgut0 ± 00 of 4 0.12Down
Larval fat body4 ± 00 of 4 0.60None
Larval trachea3 ± 31 of 4 0.41None
Larval carcass2 ± 10 of 4 0.39None
S2 cells (growing)0 ± 00 of 4 0.08Down
Whole fly7 ± 23 of 4

Looking for FBgn0050101. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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