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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050105 through 18771 annotations produced 1 hits



(CG30105):

Annotation Number : CG30105
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050105
Gbrowse : chr2R:13479309-13479953 (-) // 100.0 //
Probeset : 1632326_at
Accessions : protein= NP_725699;, nucleotide= NM_166241;
FlyMine data for FBgn0050105.
BDGP gene expression has embryonic in situ data for CG30105: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0050105 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 24 of 4 0.20Down
Head19 ± 22 of 4 0.20Down
Eye18 ± 24 of 4 0.20Down
Thoracicoabdominal ganglion37 ± 14 of 4 0.40Down
Salivary gland23 ± 51 of 4 0.25Down
Crop45 ± 44 of 4 0.50Down
Midgut26 ± 14 of 4 0.30Down
Tubule32 ± 24 of 4 0.30Down
Hindgut27 ± 24 of 4 0.30Down
Heart23 ± 24 of 4 0.25Down
Fat body25 ± 41 of 4 0.27Down
Ovary209 ± 44 of 4 2.20Up
Testis60 ± 14 of 4 0.60Down
Male accessory glands21 ± 41 of 4 0.20Down
Virgin spermatheca27 ± 10 of 4 0.29Down
Mated spermatheca41 ± 14 of 4 0.44Down
Adult carcass16 ± 20 of 4 0.20Down
Larval CNS180 ± 174 of 4 1.92Up
Larval Salivary gland86 ± 74 of 4 0.92None
Larval midgut28 ± 24 of 4 0.31Down
Larval tubule35 ± 24 of 4 0.40Down
Larval hindgut41 ± 24 of 4 0.45Down
Larval fat body22 ± 52 of 4 0.20Down
Larval trachea73 ± 114 of 4 0.78Down
Larval carcass34 ± 24 of 4 0.36Down
S2 cells (growing)79 ± 34 of 4 0.85None
Whole fly93 ± 54 of 4

Looking for FBgn0050105. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime