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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050108 through 18771 annotations produced 1 hits



/// (CG30108 /// CG30109):

Annotation Number : CG30108
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050108 /// FBgn0050109
Gbrowse : chr2R:13556909-13557322 (+) // 100.0 //
Probeset : 1637376_at
Accessions : protein= NP_725706;, nucleotide= NM_166244;
FlyMine data for FBgn0050108 /// FBgn0050109.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 11 of 4 0.20Down
Head14 34 of 4 0.50Down
Eye8 12 of 4 0.31Down
Thoracicoabdominal ganglion15 04 of 4 0.50Down
Salivary gland13 51 of 4 0.46None
Crop19 14 of 4 0.70Down
Midgut66 24 of 4 2.30Up
Tubule15 13 of 4 0.50Down
Hindgut32 24 of 4 1.10None
Heart20 04 of 4 0.70Down
Fat body26 14 of 4 0.90None
Ovary33 24 of 4 1.20None
Testis61 34 of 4 2.10Up
Male accessory glands101 74 of 4 3.50Up
Virgin spermatheca11 03 of 4 0.39Down
Mated spermatheca12 13 of 4 0.44Down
Adult carcass21 43 of 4 0.80None
Larval CNS15 24 of 4 0.54Down
Larval Salivary gland22 14 of 4 0.77Down
Larval midgut53 54 of 4 1.86Up
Larval tubule45 14 of 4 1.60Up
Larval hindgut40 24 of 4 1.39Up
Larval fat body33 34 of 4 1.10None
Larval trachea26 14 of 4 0.90None
Larval carcass18 34 of 4 0.66Down
S2 cells (growing)90 44 of 4 3.12Up
Whole fly28 24 of 4

Looking for FBgn0050108. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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