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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050110 through 18771 annotations produced 1 hits



(CG30110):

Annotation Number : CG30110
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050110
Gbrowse : chr2R:13767811-13769719 (-) // 100.0 //
Probeset : 1639683_at
Accessions : protein= NP_725734;, nucleotide= NM_166260;
FlyMine data for FBgn0050110.
VDRC has 2 RNAi stocks for FBgn0050110 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye2 ± 00 of 4 0.20Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland12 ± 30 of 4 0.97None
Crop2 ± 00 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 10 of 4 0.20Down
Hindgut0 ± 00 of 4 0.10Down
Heart0 ± 00 of 4 0.03Down
Fat body4 ± 10 of 4 0.33Down
Ovary1 ± 00 of 4 0.10Down
Testis208 ± 34 of 416.00Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.10Down
Mated spermatheca1 ± 00 of 4 0.13Down
Adult carcass7 ± 20 of 4 0.60None
Larval CNS2 ± 10 of 4 0.17Down
Larval Salivary gland4 ± 10 of 4 0.37Down
Larval midgut1 ± 00 of 4 0.13Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.13Down
Larval fat body18 ± 61 of 4 1.40None
Larval trachea1 ± 10 of 4 0.13Down
Larval carcass2 ± 10 of 4 0.19Down
S2 cells (growing)0 ± 00 of 4 0.05Down
Whole fly13 ± 12 of 4

Looking for FBgn0050110. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime