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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050120 through 18771 annotations produced 2 hits



/// (CG30120 /// CG5189):

Annotation Number : CG30120
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034350 /// FBgn0050120
Gbrowse : chr2R:14335218-14336873 (+) // 100.0 //
Probeset : 1623701_at
Accessions : protein= NP_001137699; /// NP_611334; /// NP_725795;, nucleotide= NM_001144227; /// NM_137490; /// NM_166290;
Pathway : 0005794 // Golgi apparatus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034350 /// FBgn0050120.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 24 of 4 4.90Up
Head7 ± 20 of 4 1.50None
Eye7 ± 10 of 4 1.56None
Thoracicoabdominal ganglion16 ± 22 of 4 3.40Up
Salivary gland10 ± 20 of 4 2.16None
Crop8 ± 20 of 4 1.80None
Midgut9 ± 10 of 4 1.90None
Tubule5 ± 10 of 4 1.10None
Hindgut6 ± 20 of 4 1.40None
Heart3 ± 10 of 4 0.69None
Fat body5 ± 50 of 4 1.13None
Ovary2 ± 10 of 4 0.50None
Testis5 ± 10 of 4 1.10None
Male accessory glands5 ± 20 of 4 1.20None
Virgin spermatheca6 ± 10 of 4 1.43None
Mated spermatheca5 ± 10 of 4 1.15None
Adult carcass5 ± 40 of 4 1.10None
Larval CNS7 ± 11 of 4 1.51None
Larval Salivary gland4 ± 20 of 4 1.02None
Larval midgut6 ± 20 of 4 1.35None
Larval tubule6 ± 20 of 4 1.40None
Larval hindgut5 ± 00 of 4 1.17None
Larval fat body11 ± 20 of 4 2.40Up
Larval trachea7 ± 20 of 4 1.51None
Larval carcass9 ± 10 of 4 1.88None
S2 cells (growing)9 ± 00 of 4 2.01Up
Whole fly4 ± 10 of 4



/// (CG30120 /// CG5189):

Annotation Number : CG5189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034350 /// FBgn0050120
Gbrowse : chr2R:14334074-14334861 (+) // 100.0 //
Probeset : 1622907_at
Accessions : protein= NP_001137699; /// NP_611334; /// NP_725795;, nucleotide= NM_001144227; /// NM_137490; /// NM_166290;
Pathway : 0005794 // Golgi apparatus // non-traceable author statement
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034350 /// FBgn0050120.
Homophila reports that CG5189 is a close match (7e-44) to human gene MAPBPIP;p14 (NP_054736), a gene associated with Immunodeficiency due to defect in MAPBP-interacting protein, 610798 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain214 ± 54 of 4 1.90Up
Head182 ± 24 of 4 1.60Up
Eye217 ± 54 of 4 1.88Up
Thoracicoabdominal ganglion235 ± 84 of 4 2.00Up
Salivary gland303 ± 204 of 4 2.63Up
Crop159 ± 124 of 4 1.40Up
Midgut200 ± 44 of 4 1.70Up
Tubule145 ± 54 of 4 1.30Up
Hindgut173 ± 14 of 4 1.50Up
Heart279 ± 74 of 4 2.42Up
Fat body183 ± 274 of 4 1.59Up
Ovary86 ± 14 of 4 0.80Down
Testis26 ± 34 of 4 0.20Down
Male accessory glands204 ± 34 of 4 1.80Up
Virgin spermatheca144 ± 24 of 4 1.25Up
Mated spermatheca178 ± 104 of 4 1.54Up
Adult carcass158 ± 64 of 4 1.40Up
Larval CNS108 ± 84 of 4 0.94None
Larval Salivary gland193 ± 314 of 4 1.68None
Larval midgut176 ± 84 of 4 1.53Up
Larval tubule292 ± 84 of 4 2.50Up
Larval hindgut143 ± 44 of 4 1.24Up
Larval fat body268 ± 354 of 4 2.30Up
Larval trachea134 ± 224 of 4 1.17None
Larval carcass110 ± 34 of 4 0.96None
S2 cells (growing)134 ± 34 of 4 1.17Up
Whole fly115 ± 44 of 4

Looking for FBgn0050120. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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