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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050122 through 18771 annotations produced 1 hits



(CG30122):

Annotation Number : CG30122
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050122
Gbrowse : chr2R:14519833-14526773 (-) // 100.0 //
Probeset : 1640997_at
Accessions : protein= NP_001163196; /// NP_001163197; /// NP_001163198; /// NP_611354;, nucleotide= NM_001169725; /// NM_001169726; /// NM_001169727; /// NM_137510;
Pathway : via spliceosome // inferred by curator /// 0001906 // cell killing // inferred from electronic annotation"
Interpro : 0030530 // heterogeneous nuclear ribonucleoprotein complex // inferred from sequence or structural similarity /// 007101
FlyMine data for FBgn0050122.
BioGrid reports that CG30122 interacts with CG32635 CG8615 CG3294 CG5352 CG5792 CG6058 CG7879 CG9083 CG9277 CG9373 .
VDRC has 1 RNAi stocks for FBgn0050122 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain614 194 of 4 1.50Up
Head341 144 of 4 0.90Down
Eye417 124 of 4 1.05None
Thoracicoabdominal ganglion486 84 of 4 1.20Up
Salivary gland336 204 of 4 0.84None
Crop413 184 of 4 1.00None
Midgut330 154 of 4 0.80Down
Tubule300 54 of 4 0.80Down
Hindgut351 54 of 4 0.90None
Heart296 124 of 4 0.74Down
Fat body318 224 of 4 0.80Down
Ovary731 124 of 4 1.80Up
Testis214 34 of 4 0.50Down
Male accessory glands361 84 of 4 0.90None
Virgin spermatheca404 284 of 4 1.01None
Mated spermatheca377 104 of 4 0.95None
Adult carcass213 44 of 4 0.50Down
Larval CNS1238 814 of 4 3.10Up
Larval Salivary gland587 134 of 4 1.47Up
Larval midgut245 84 of 4 0.62Down
Larval tubule306 04 of 4 0.80Down
Larval hindgut415 154 of 4 1.04None
Larval fat body276 54 of 4 0.70Down
Larval trachea770 624 of 4 1.93Up
Larval carcass505 254 of 4 1.27Up
S2 cells (growing)771 114 of 4 1.93Up
Whole fly399 164 of 4

Looking for FBgn0050122. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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