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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050125 through 18771 annotations produced 1 hits



CG30125 (Ir56a):

Annotation Number : CG30125
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050125
Gbrowse : chr2R:14981771-14983679 (-) // 100.0 //
Probeset : 1637910_at
Accessions : protein= NP_725850;, nucleotide= NM_166323;
FlyMine data for FBgn0050125.
VDRC has 3 RNAi stocks for FBgn0050125 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.20None
Head1 ± 00 of 4 0.50None
Eye4 ± 10 of 4 1.38None
Thoracicoabdominal ganglion3 ± 10 of 4 1.10None
Salivary gland12 ± 40 of 4 4.13None
Crop4 ± 10 of 4 1.50None
Midgut7 ± 10 of 4 2.50None
Tubule4 ± 10 of 4 1.40None
Hindgut2 ± 00 of 4 0.80None
Heart0 ± 00 of 4 0.16None
Fat body9 ± 20 of 4 3.09Up
Ovary2 ± 10 of 4 0.80None
Testis1 ± 10 of 4 0.60None
Male accessory glands8 ± 20 of 4 2.90None
Virgin spermatheca9 ± 01 of 4 3.40Up
Mated spermatheca6 ± 10 of 4 2.13None
Adult carcass2 ± 10 of 4 1.00None
Larval CNS4 ± 21 of 4 1.70None
Larval Salivary gland4 ± 10 of 4 1.50None
Larval midgut4 ± 10 of 4 1.50None
Larval tubule5 ± 11 of 4 1.80None
Larval hindgut5 ± 10 of 4 1.96None
Larval fat body3 ± 20 of 4 1.40None
Larval trachea1 ± 10 of 4 0.58None
Larval carcass1 ± 00 of 4 0.62None
S2 cells (growing)4 ± 00 of 4 1.53None
Whole fly2 ± 10 of 4

Looking for FBgn0050125. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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