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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050148 through 18771 annotations produced 1 hits


Annotation Number : CG30148
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050148
Gbrowse : chr2R:16434534-16435186 (-) // 100.0 //
Probeset : 1635894_at
Accessions : protein= NP_665889;, nucleotide= NM_145882;
FlyMine data for FBgn0050148.
BDGP gene expression has embryonic in situ data for CG30148: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0050148 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 22 of 4 0.30Down
Head133 134 of 4 5.40Up
Eye54 94 of 4 2.20None
Thoracicoabdominal ganglion6 00 of 4 0.20Down
Salivary gland4 00 of 4 0.19Down
Crop3 10 of 4 0.10Down
Midgut21 34 of 4 0.90None
Tubule4 00 of 4 0.20Down
Hindgut10 21 of 4 0.40Down
Heart132 44 of 4 5.35Up
Fat body153 274 of 4 6.22Up
Ovary0 00 of 4 0.00Down
Testis3 10 of 4 0.10Down
Male accessory glands10 40 of 4 0.40Down
Virgin spermatheca89 74 of 4 3.64Up
Mated spermatheca119 144 of 4 4.83Up
Adult carcass83 74 of 4 3.40Up
Larval CNS3 10 of 4 0.15Down
Larval Salivary gland21 33 of 4 0.88None
Larval midgut5 10 of 4 0.21Down
Larval tubule32 54 of 4 1.30None
Larval hindgut59 34 of 4 2.39Up
Larval fat body1430 1094 of 458.00Up
Larval trachea19 134 of 4 0.79None
Larval carcass34 34 of 4 1.38None
S2 cells (growing)44 14 of 4 1.81Up
Whole fly24 14 of 4

Looking for FBgn0050148. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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