FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0050154 through 18771 annotations produced 1 hits

(CG30154):

Annotation Number : CG30154
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050154
Gbrowse : chr2R:16420878-16421441 (+) // 100.0 //
Probeset : 1640217_at
Accessions : protein= NP_665881;, nucleotide= NM_145874;
FlyMine data for FBgn0050154.
VDRC has 2 RNAi stocks for FBgn0050154 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	Down
Head	23 ± 0	3 of 4	0.80	None
Eye	21 ± 1	4 of 4	0.72	None
Thoracicoabdominal ganglion	10 ± 2	1 of 4	0.30	Down
Salivary gland	75 ± 1	4 of 4	2.55	Up
Crop	23 ± 2	3 of 4	0.80	None
Midgut	54 ± 3	4 of 4	1.80	Up
Tubule	8 ± 2	0 of 4	0.30	Down
Hindgut	32 ± 1	4 of 4	1.10	None
Heart	149 ± 19	4 of 4	5.03	Up
Fat body	129 ± 25	4 of 4	4.36	Up
Ovary	2 ± 1	0 of 4	0.10	Down
Testis	4 ± 1	0 of 4	0.20	Down
Male accessory glands	60 ± 7	4 of 4	2.00	Up
Virgin spermatheca	25 ± 5	2 of 4	0.85	None
Mated spermatheca	46 ± 6	4 of 4	1.56	None
Adult carcass	144 ± 6	4 of 4	4.90	Up
Larval CNS	21 ± 3	3 of 4	0.73	None
Larval Salivary gland	63 ± 11	4 of 4	2.12	None
Larval midgut	27 ± 3	0 of 4	0.93	None
Larval tubule	18 ± 0	0 of 4	0.60	None
Larval hindgut	115 ± 10	4 of 4	3.88	Up
Larval fat body	80 ± 13	4 of 4	2.70	Up
Larval trachea	1327 ± 155	4 of 4	44.71	Up
Larval carcass	292 ± 30	4 of 4	9.84	Up
S2 cells (growing)	0 ± 0	0 of 4	0.02	Down
Whole fly	29 ± 4	3 of 4

Looking for FBgn0050154. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720