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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050172 through 18771 annotations produced 1 hits



(CG30172):

Annotation Number : CG30172
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050172
Gbrowse : chr2R:19918164-19918724 (-) // 100.0 //
Probeset : 1638088_at
Accessions : protein= NP_726402;, nucleotide= NM_166649;
FlyMine data for FBgn0050172.
BDGP gene expression has embryonic in situ data for CG30172: 9 pix of staining in 3 body parts.
TRiP has 1 RNAi stocks for FBgn0050172 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050172 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1543 244 of 432.80Up
Head536 164 of 411.40Up
Eye83 94 of 4 1.77Up
Thoracicoabdominal ganglion1547 454 of 432.90Up
Salivary gland4 00 of 4 0.10Down
Crop3 10 of 4 0.10Down
Midgut3 00 of 4 0.10Down
Tubule2 00 of 4 0.10Down
Hindgut2 00 of 4 0.00Down
Heart9 11 of 4 0.21Down
Fat body13 70 of 4 0.29Down
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca4 00 of 4 0.10Down
Mated spermatheca5 10 of 4 0.12Down
Adult carcass15 80 of 4 0.30Down
Larval CNS1053 544 of 422.37Up
Larval Salivary gland7 20 of 4 0.17Down
Larval midgut2 00 of 4 0.06Down
Larval tubule11 10 of 4 0.20Down
Larval hindgut1 00 of 4 0.03Down
Larval fat body21 60 of 4 0.50Down
Larval trachea4 30 of 4 0.10Down
Larval carcass5 20 of 4 0.12Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly47 73 of 4

Looking for FBgn0050172. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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