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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050178 through 18771 annotations produced 1 hits



(CG30178):

Annotation Number : CG30178
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050178
Gbrowse : chr2R:19874196-19874806 (+) // 100.0 //
Probeset : 1630818_at
Accessions : protein= NP_726395;, nucleotide= NM_166645;
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from ele
FlyMine data for FBgn0050178.
Homophila reports that CG30178 is a close match (2e-12) to human gene LMX1B;NPS1 (NP_002307), a gene associated with Nail-patella syndrome with open-angle glaucoma, 137750 (3);Nail-patella syndrome, 161200 (3).
VDRC has 2 RNAi stocks for FBgn0050178 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.10Down
Head3 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.18Down
Crop1 ± 00 of 4 0.00Down
Midgut6 ± 20 of 4 0.20Down
Tubule2 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.00Down
Heart2 ± 00 of 4 0.06Down
Fat body3 ± 20 of 4 0.10Down
Ovary1 ± 00 of 4 0.00Down
Testis474 ± 264 of 413.00Up
Male accessory glands6 ± 20 of 4 0.20Down
Virgin spermatheca3 ± 10 of 4 0.10Down
Mated spermatheca1 ± 00 of 4 0.05Down
Adult carcass4 ± 10 of 4 0.10Down
Larval CNS1 ± 10 of 4 0.05Down
Larval Salivary gland1 ± 00 of 4 0.05Down
Larval midgut4 ± 00 of 4 0.11Down
Larval tubule2 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.08Down
Larval fat body47 ± 222 of 4 1.30None
Larval trachea4 ± 41 of 4 0.13Down
Larval carcass0 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.06Down
Whole fly36 ± 34 of 4

Looking for FBgn0050178. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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