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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050181 through 18771 annotations produced 1 hits



(CG30181):

Annotation Number : CG30181
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050181
Gbrowse : chr2R:19426153-19428296 (-) // 100.0 //
Probeset : 1629178_at
Accessions : protein= NP_726336;, nucleotide= NM_166606;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005272 // sodium channel activity // inferred from electronic annotation
FlyMine data for FBgn0050181.
VDRC has 1 RNAi stocks for FBgn0050181 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.20None
Head3 ± 10 of 4 3.60None
Eye2 ± 10 of 4 2.68None
Thoracicoabdominal ganglion3 ± 00 of 4 3.50None
Salivary gland4 ± 10 of 4 4.79None
Crop2 ± 00 of 4 2.80None
Midgut4 ± 10 of 4 4.60None
Tubule33 ± 32 of 435.50Up
Hindgut4 ± 10 of 4 4.40None
Heart1 ± 00 of 4 1.24None
Fat body5 ± 30 of 4 6.03None
Ovary1 ± 00 of 4 1.60None
Testis0 ± 00 of 4 0.70None
Male accessory glands4 ± 20 of 4 4.70None
Virgin spermatheca5 ± 10 of 4 5.32None
Mated spermatheca2 ± 00 of 4 2.68None
Adult carcass1 ± 00 of 4 1.80None
Larval CNS2 ± 20 of 4 2.95None
Larval Salivary gland4 ± 10 of 4 4.74None
Larval midgut2 ± 10 of 4 2.76None
Larval tubule15 ± 10 of 416.40Up
Larval hindgut3 ± 10 of 4 3.84None
Larval fat body3 ± 00 of 4 3.30Up
Larval trachea0 ± 00 of 4 0.95None
Larval carcass1 ± 00 of 4 1.95None
S2 cells (growing)3 ± 10 of 4 3.26None
Whole fly1 ± 00 of 4

Looking for FBgn0050181. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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